Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1446.4 792 100.0
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1145.2 656 93.8
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 0.0e+00 1142.9 656 95.4
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1134.8 656 93.3
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1133.6 656 94.5
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 3.3e-235 818.9 537 84.0
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 1.2e-195 687.6 635 63.6
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 4.3e-182 642.5 587 68.5
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 4.4e-163 579.3 657 56.2
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.8e-156 557.4 671 53.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 1.6e-152 544.3 667 51.7
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.0e-151 541.6 690 52.8
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 3.3e-150 536.6 667 52.3
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.7e-149 532.7 707 48.5
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 8.4e-146 521.9 692 49.4
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 6.0e-144 515.8 661 51.7
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 7.3e-142 508.8 676 49.1
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.4e-140 504.6 644 53.0
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 2.6e-139 500.4 637 51.8
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.4e-137 493.8 687 49.8
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 4.6e-136 489.6 585 51.8
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 7.9e-136 488.8 678 49.3
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.9e-135 486.5 672 50.3
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.9e-135 486.5 653 52.4
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 8.7e-135 485.3 670 51.5
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 3.3e-134 483.4 634 52.5
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 9.6e-134 481.9 670 49.4
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 2.1e-133 480.7 656 50.2
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.8e-133 480.3 650 52.6
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.8e-132 477.6 683 48.9
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.6e-131 473.8 576 52.3
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 4.5e-131 473.0 623 48.3
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 7.6e-131 472.2 714 48.6
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 8.4e-130 468.8 679 46.5
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 1.1e-129 468.4 645 48.8
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 3.2e-129 466.8 576 51.7
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 2.7e-128 463.8 697 47.3
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 7.9e-128 462.2 662 47.4
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 3.0e-127 460.3 645 48.4
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 5.6e-126 456.1 696 46.7
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 9.6e-126 455.3 677 45.8
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 5.3e-124 449.5 682 44.9
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.6e-123 447.2 686 44.9
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 3.8e-122 443.4 622 46.6
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 1.5e-118 431.4 683 43.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 9.0e-116 422.2 610 46.6
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 4.5e-115 419.9 723 43.0
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 7.6e-115 419.1 710 42.4
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 4.6e-112 409.8 663 44.3
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 5.7e-110 402.9 442 56.1
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.8e-106 390.2 620 44.5
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 9.7e-102 375.6 436 52.1
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 3.7e-101 373.6 442 51.4
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 3.6e-96 357.1 605 42.5
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 1.1e-94 352.1 483 49.5
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.8e-92 344.7 309 65.7
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 7.2e-89 332.8 559 42.0
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 8.5e-82 309.3 481 43.2
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 1.3e-77 295.4 470 44.9
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.8e-77 293.5 290 56.2
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.3e-74 285.4 553 36.7
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 1.5e-73 282.0 431 48.7
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 6.1e-72 276.6 284 59.2
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 5.7e-70 270.0 662 38.1
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 2.2e-69 268.1 633 35.1
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.1e-68 265.8 286 57.0
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.3e-57 227.3 245 51.8
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 1.2e-54 219.2 222 59.0
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 4.3e-49 200.7 274 43.4
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.2e-46 192.6 392 40.3
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.3e-42 178.3 407 38.1
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 8.4e-37 159.8 256 45.7
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 1.2e-35 156.0 411 30.7
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 2.7e-35 154.8 173 46.2
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.6e-32 144.4 318 33.0
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 2.0e-30 138.7 386 34.7
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 8.4e-29 133.3 236 33.5
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.3e-26 125.2 302 28.8
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.3e-26 125.2 302 28.8
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-25 122.1 238 32.8
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 1.1e-23 116.3 262 33.6
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.0e-23 114.4 296 29.1
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 9.0e-23 113.2 505 28.9
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.9e-22 109.8 298 29.5
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 7.1e-20 103.6 476 28.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.8e-18 99.0 251 31.5
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 1.1e-17 96.3 158 48.1
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 1.8e-15 89.0 127 46.5
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.1e-12 79.7 250 25.6
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.9e-12 79.0 313 25.9
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.9e-12 79.0 268 25.0
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 4.2e-12 77.8 313 25.9
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 7.1e-12 77.0 332 25.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 7.1e-12 77.0 275 26.2
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 2.1e-11 75.5 284 24.6
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 2.1e-11 75.5 274 24.5
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.7e-11 75.1 313 24.9
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 3.5e-11 74.7 332 24.1
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 4.6e-11 74.3 265 24.9
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 7.9e-11 73.6 260 25.4
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.0e-10 73.2 126 38.1
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.0e-10 73.2 261 26.1
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.3e-10 72.8 316 24.1
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.8e-10 72.4 275 23.6
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.8e-10 72.4 288 24.7
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 3.9e-10 71.2 216 25.9
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 6.7e-10 70.5 223 24.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.5e-09 68.6 275 24.0
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 3.3e-09 68.2 244 25.0
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 4.3e-09 67.8 299 24.4
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.3e-09 67.8 279 25.1
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 5.6e-09 67.4 255 25.9
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 5.6e-09 67.4 252 25.8
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 7.4e-09 67.0 281 26.3
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 9.6e-09 66.6 243 23.9
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 9.6e-09 66.6 313 25.6
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 1.3e-08 66.2 313 24.0
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.6e-08 65.9 244 25.8
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 2.1e-08 65.5 293 24.2
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 2.1e-08 65.5 246 27.2
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.8e-08 65.1 190 30.5
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 2.8e-08 65.1 105 47.6
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 2.8e-08 65.1 321 24.0
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 2.8e-08 65.1 312 23.7
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 3.7e-08 64.7 244 24.6
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 3.7e-08 64.7 213 28.2
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 4.8e-08 64.3 271 21.8
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 4.8e-08 64.3 299 23.7
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.1e-07 63.2 193 26.4
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.1e-07 63.2 347 23.3
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 1.1e-07 63.2 285 25.6
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 1.8e-07 62.4 285 24.2
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 3.1e-07 61.6 376 23.4
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 9.0e-07 60.1 241 23.7
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 9.0e-07 60.1 241 23.7
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.2e-06 59.7 275 23.6
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.2e-06 59.7 290 22.8
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.5e-06 59.3 285 23.9
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.6e-06 58.5 309 22.7
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 2.6e-06 58.5 301 24.6
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 3.4e-06 58.2 219 24.7
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 3.4e-06 58.2 285 23.9
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 5.8e-06 57.4 221 24.0


User provided reference genes

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