Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.7e-177 624.8 317 100.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.4e-168 596.3 317 96.2
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.1e-168 593.6 317 95.3
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 4.2e-165 584.7 341 89.1
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.0e-155 552.0 351 81.8
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 4.8e-153 544.7 292 95.2
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.5e-151 538.5 292 94.9
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.1e-144 515.4 341 78.9
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.0e-139 500.4 341 74.8
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 4.1e-136 488.4 340 75.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.7e-119 432.6 343 65.9
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.5e-111 405.6 343 64.7
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 4.3e-109 398.7 345 62.0
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 5.6e-109 398.3 287 69.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.1e-107 394.0 345 62.9
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.1e-104 384.0 342 59.4
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.6e-103 380.2 345 58.8
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.0e-102 377.5 346 59.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.1e-102 375.2 345 59.7
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.5e-101 372.9 345 58.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 3.3e-101 372.5 344 57.3
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 7.3e-101 371.3 345 58.6
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 8.1e-100 367.9 345 56.5
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 2.0e-98 363.2 356 57.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.9e-98 360.9 345 58.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 8.4e-97 357.8 345 57.1
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.4e-96 356.3 345 57.1
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.6e-95 352.1 344 56.7
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.0e-95 351.7 341 55.4
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 3.9e-94 349.0 341 55.4
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.3e-93 345.5 306 59.5
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 7.3e-93 344.7 337 54.6
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.3e-93 344.7 345 53.6
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-92 343.6 345 53.9
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.1e-92 343.2 345 53.6
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.8e-92 342.0 345 54.5
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.4e-91 340.5 338 57.4
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.4e-91 339.7 347 55.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.0e-91 339.0 342 54.1
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.0e-91 337.8 344 56.4
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-90 337.4 344 54.7
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 4.5e-90 335.5 344 50.6
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.7e-89 333.6 342 54.4
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.9e-89 332.8 344 52.3
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.9e-89 332.8 344 50.6
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 6.4e-89 331.6 346 54.6
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.2e-88 329.3 344 54.1
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 7.1e-88 328.2 342 53.5
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 7.1e-88 328.2 341 53.4
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 9.3e-88 327.8 344 52.3
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 2.1e-87 326.6 342 53.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.1e-87 326.6 341 52.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.5e-87 325.9 341 51.9
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.5e-87 325.9 341 54.3
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.9e-87 324.7 344 49.7
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.8e-86 323.6 341 51.3
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.3e-86 323.2 341 51.6
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 3.9e-86 322.4 340 52.6
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 6.7e-86 321.6 348 50.9
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 6.7e-86 321.6 348 52.6
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.7e-86 321.2 344 52.3
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.1e-85 320.9 341 51.3
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.5e-85 320.5 344 53.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.9e-85 320.1 344 52.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.6e-85 318.5 344 53.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.6e-85 318.5 344 53.5
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 6.2e-84 315.1 337 53.7
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 8.1e-84 314.7 347 50.7
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.8e-83 313.5 347 50.4
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 3.1e-83 312.8 338 51.2
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 4.0e-83 312.4 339 52.5
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.3e-83 312.0 345 52.2
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.3e-83 312.0 337 52.2
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.4e-82 309.3 341 51.3
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.3e-81 307.4 292 57.5
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.7e-81 307.0 339 50.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.9e-81 306.2 328 53.4
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 4.9e-81 305.4 341 49.9
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.1e-80 304.3 349 49.9
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 4.2e-80 302.4 348 48.6
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.2e-79 300.8 345 48.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.1e-79 300.1 286 55.6
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.1e-79 300.1 292 53.8
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.5e-79 299.3 346 49.4
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 3.5e-79 299.3 339 49.3
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 7.9e-79 298.1 348 49.1
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.0e-78 297.7 341 48.7
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.8e-78 297.0 332 50.3
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.1e-77 294.3 338 48.5
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-77 294.3 335 48.1
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 7.4e-77 291.6 320 50.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 9.6e-77 291.2 286 54.2
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 9.6e-77 291.2 339 48.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 9.6e-77 291.2 341 47.5
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.1e-76 290.0 336 51.5
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.1e-75 287.7 341 47.8
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.4e-75 287.3 345 47.0
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.4e-75 286.6 345 47.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.1e-75 286.2 286 54.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.2e-74 284.3 283 53.7
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.0e-74 283.5 341 47.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.5e-74 282.3 282 54.3
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 7.6e-74 281.6 330 48.8
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.0e-73 281.2 282 54.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.9e-73 279.6 346 48.8
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 6.5e-73 278.5 346 48.3
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.1e-72 277.7 345 46.1
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.9e-72 276.9 329 49.2
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 4.2e-72 275.8 342 47.1
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 4.2e-72 275.8 341 47.2
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 5.5e-72 275.4 327 48.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.3e-72 274.6 353 47.9
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-71 274.2 327 48.6
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.6e-71 272.3 326 48.2
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.8e-70 270.4 348 45.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-70 270.0 327 48.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.5e-69 266.5 321 48.9
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 4.8e-68 262.3 320 47.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 6.3e-68 261.9 328 48.5
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 8.2e-68 261.5 265 57.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.4e-67 260.8 339 45.1
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.8e-67 260.4 334 47.0
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.5e-66 257.3 320 47.8
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.5e-64 248.8 329 45.3
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.1e-63 246.9 343 44.9
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 7.9e-63 245.0 327 45.0
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.9e-61 240.4 282 46.1
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.5e-61 240.0 279 48.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.3e-60 237.7 281 47.7
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.1e-59 233.0 335 45.1
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.2e-58 231.1 347 40.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.8e-54 217.2 315 40.3
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.0e-54 216.5 199 55.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 7.4e-53 211.8 329 40.7
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-52 210.7 137 71.5
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 8.2e-52 208.4 290 43.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.9e-48 197.2 137 68.6
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.4e-48 194.9 129 69.8
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 4.8e-44 182.6 335 38.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.1e-43 179.5 324 38.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.0e-42 177.2 246 43.5
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 4.5e-42 176.0 208 44.2
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.6e-34 151.0 321 37.1
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 3.8e-33 146.4 287 39.7
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-28 131.3 103 62.1
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.4e-19 101.3 163 39.9
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 3.9e-09 66.6 202 28.2
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 8.6e-09 65.5 290 25.9
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.1e-07 60.8 39 76.9


User provided reference genes

Program Settings