Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.9e-121 439.5 270 100.0
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.4e-65 251.1 195 90.3
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 4.7e-64 248.8 255 62.7
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 1.0e-63 247.7 255 62.4
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.4e-63 247.3 255 62.7
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 1.4e-63 247.3 255 62.7
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 1.4e-63 247.3 255 62.7
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.8e-63 246.9 235 66.4
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 4.4e-62 242.3 211 69.7
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 4.8e-61 238.8 192 74.5
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.8e-61 238.8 192 74.5
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.6e-59 233.0 197 71.1
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.9e-58 229.6 187 72.7
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 3.8e-58 229.2 187 73.3
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 5.5e-57 225.3 185 73.0
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.6e-56 223.8 184 71.7
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 3.0e-55 219.5 243 58.4
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 8.8e-55 218.0 185 71.4
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 2.2e-53 213.4 195 66.7
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.8e-53 212.2 248 58.1
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 3.1e-44 183.0 246 49.6
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-43 180.3 139 73.4
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 1.3e-42 177.6 245 49.0
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.5e-41 174.1 243 49.0
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.5e-41 174.1 243 49.0
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 3.6e-40 169.5 211 51.2
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 4.7e-40 169.1 191 55.5
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 2.3e-39 166.8 215 50.2
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 3.0e-39 166.4 242 49.6
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 4.0e-39 166.0 130 70.8
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 2.6e-38 163.3 191 53.4
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.3e-37 161.0 189 53.4
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.2e-37 160.2 189 52.9
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 2.9e-37 159.8 189 52.9
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.6e-35 152.5 82 96.3
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 3.3e-33 146.4 246 41.9
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 5.6e-33 145.6 211 44.1
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 7.3e-33 145.2 224 47.3
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.6e-32 144.1 254 39.8
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.6e-32 142.9 233 43.8
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 3.6e-32 142.9 246 43.1
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 6.2e-32 142.1 255 41.6
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 6.2e-32 142.1 247 40.1
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 1.4e-31 141.0 211 46.0
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 3.1e-31 139.8 211 45.5
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 5.2e-31 139.0 233 42.5
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 8.9e-31 138.3 243 41.6
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 8.9e-31 138.3 243 39.1
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 2.0e-30 137.1 174 51.7
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 2.2e-29 133.7 211 44.1
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.9e-29 133.3 211 42.2
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.9e-29 133.3 211 42.2
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 2.4e-28 130.2 235 40.4
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 4.1e-28 129.4 211 41.7
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 4.1e-28 129.4 243 41.2
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 5.4e-28 129.0 246 39.8
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 7.0e-28 128.6 248 39.5
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.0e-27 127.1 211 40.3
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 7.8e-27 125.2 240 37.9
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 7.8e-27 125.2 240 37.5
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.3e-26 124.4 213 40.4
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 1.3e-26 124.4 247 38.5
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.7e-26 124.0 210 40.5
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.3e-26 123.6 210 40.5
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 3.0e-26 123.2 246 37.0
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 5.0e-26 122.5 251 36.7
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.1e-25 121.3 256 36.7
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.5e-25 120.9 246 38.6
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 3.3e-25 119.8 246 36.6
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 4.3e-25 119.4 200 40.0
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 5.6e-25 119.0 207 41.1
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 9.5e-25 118.2 246 36.2
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 1.2e-24 117.9 306 34.3
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 1.2e-24 117.9 211 38.9
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.6e-24 117.5 255 37.6
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.1e-24 117.1 246 35.4
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 2.8e-24 116.7 233 39.5
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 3.6e-24 116.3 245 37.1
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 4.7e-24 115.9 210 39.5
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 8.1e-24 115.2 224 39.7
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.1e-23 114.8 246 35.4
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.1e-23 114.8 206 39.8
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 1.1e-23 114.8 206 39.8
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 1.1e-23 114.8 246 37.4
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.1e-23 114.8 210 39.5
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.4e-23 114.4 210 39.5
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.4e-23 114.4 210 39.5
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 3.1e-23 113.2 255 36.9
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 3.1e-23 113.2 245 36.7
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 4.0e-23 112.8 235 36.2
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 8.9e-23 111.7 207 39.1
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 8.9e-23 111.7 210 39.0
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.2e-22 111.3 210 41.0
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.2e-22 111.3 210 39.0
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 2.0e-22 110.5 207 37.7
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 2.0e-22 110.5 207 37.7
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.0e-22 110.5 207 37.7
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 2.0e-22 110.5 179 40.2
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 2.0e-22 110.5 245 36.3
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.6e-22 110.2 207 38.2
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.7e-21 107.5 207 37.7
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.7e-21 106.3 257 35.0
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 4.9e-21 105.9 243 33.3
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 6.4e-21 105.5 226 37.2
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 8.3e-21 105.1 220 36.4
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 8.3e-21 105.1 243 34.2
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 8.3e-21 105.1 226 37.2
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.4e-20 104.4 246 33.3
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 1.9e-20 104.0 246 32.1
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 5.4e-20 102.4 228 35.1
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 5.4e-20 102.4 194 38.1
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 7.1e-20 102.1 256 34.4
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 2.7e-19 100.1 210 37.6
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 2.7e-19 100.1 194 37.6
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 2.7e-19 100.1 246 36.6
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 7.8e-19 98.6 245 33.5
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 3.0e-18 96.7 210 35.2
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 5.1e-18 95.9 194 36.6
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.1e-17 94.7 226 34.5
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 7.3e-17 92.0 230 34.3
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.3e-17 92.0 238 31.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 9.5e-17 91.7 236 33.9
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 1.2e-16 91.3 194 34.0
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 6.2e-16 89.0 261 31.0
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.1e-15 88.2 261 31.0
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 3.1e-15 86.7 428 24.5
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 5.2e-15 85.9 295 28.5
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 2.0e-14 84.0 105 57.1
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.2e-13 80.5 232 32.3
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 5.4e-12 75.9 56 83.9
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 5.4e-12 75.9 418 27.0
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.0e-10 71.6 208 27.4
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.6e-08 64.3 144 32.6
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 2.8e-08 63.5 81 46.9
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 8.1e-08 62.0 107 57.0
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 5.2e-07 59.3 250 28.8
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 5.8e-06 55.8 213 26.3


User provided reference genes

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