Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.4e-81 304.3 156 100.0
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 9.2e-73 276.9 156 93.6
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 1.2e-72 276.6 156 93.6
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.0e-72 274.2 156 92.9
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.7e-71 272.7 157 90.4
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 3.9e-71 271.6 156 91.7
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 1.9e-70 269.2 157 89.2
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 1.9e-70 269.2 156 91.7
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 4.9e-66 254.6 154 89.6
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 4.5e-59 231.5 132 91.7
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 3.7e-45 185.3 132 78.8
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.6e-32 141.7 140 59.3
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.3e-29 131.3 108 61.1
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 1.8e-28 129.8 150 50.0
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 2.4e-28 129.4 108 61.1
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 2.4e-28 129.4 152 50.0
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.9e-26 122.5 123 56.9
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 7.2e-25 117.9 158 46.8
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 3.6e-24 115.5 130 53.8
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 3.9e-23 112.1 115 53.9
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.5e-22 110.2 149 44.3
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-22 110.2 176 41.5
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 2.6e-22 109.4 116 53.4
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 5.7e-22 108.2 114 50.9
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 5.7e-22 108.2 111 52.3
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 7.4e-22 107.8 149 43.6
FAN08G2286 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.3e-21 107.1 95 60.0
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 2.8e-21 105.9 164 43.3
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 6.3e-21 104.8 133 45.1
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 6.3e-21 104.8 171 43.3
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 1.1e-20 104.0 120 51.7
MD03G1009500 Malus domestica HOM05D007277 ORTHO05D006336 4.1e-20 102.1 117 51.3
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 4.5e-19 98.6 114 49.1
FAN18G0842 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.1e-17 94.0 159 42.1
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 1.1e-17 94.0 111 52.3
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 1.9e-17 93.2 111 48.6
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 3.2e-17 92.4 174 37.9
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 5.5e-17 91.7 157 43.3
FAN18G1844 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.2e-17 91.3 110 51.8
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 1.6e-16 90.1 178 37.6
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 6.1e-16 88.2 147 38.8
FAN08G2638 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.1e-16 88.2 86 54.7
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 1.8e-15 86.7 154 41.6
FvH4_5g13160 Fragaria vesca HOM05D007277 ORTHO05D006336 1.8e-15 86.7 85 64.7
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 2.3e-15 86.3 127 41.7
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 2.3e-15 86.3 164 37.2
MD12G1151700 Malus domestica HOM05D007277 ORTHO05D006336 5.2e-15 85.1 114 45.6
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-14 83.6 157 39.5
FvH4_5g13223 Fragaria vesca HOM05D007277 ORTHO05D006336 2.6e-14 82.8 120 45.0
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 4.4e-14 82.0 126 41.3
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 4.4e-14 82.0 132 38.6
FvH4_5g13222 Fragaria vesca HOM05D007277 ORTHO05D006336 5.7e-14 81.6 84 53.6
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 5.7e-14 81.6 139 44.6
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 2.8e-13 79.3 123 41.5
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.8e-13 79.3 115 41.7
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 4.8e-13 78.6 110 44.5
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 6.3e-13 78.2 118 41.5
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 6.3e-13 78.2 118 41.5
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 1.1e-12 77.4 153 39.2
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.4e-12 77.0 113 37.2
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.4e-12 76.3 149 38.9
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 2.4e-12 76.3 111 42.3
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 4.1e-12 75.5 111 39.6
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 4.1e-12 75.5 153 39.2
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.2e-11 73.9 132 37.9
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 1.2e-11 73.9 123 40.7
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 1.2e-11 73.9 139 36.7
MD12G1151900 Malus domestica HOM05D007277 ORTHO05D006336 2.0e-11 73.2 96 46.9
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 2.0e-11 73.2 133 36.8
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 2.6e-11 72.8 107 44.9
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 2.6e-11 72.8 111 41.4
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 3.5e-11 72.4 145 33.8
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 4.5e-11 72.0 104 39.4
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.0e-10 70.9 96 40.6
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 1.0e-10 70.9 141 38.3
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 1.3e-10 70.5 92 47.8
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 1.7e-10 70.1 113 40.7
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 2.9e-10 69.3 155 38.7
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 2.9e-10 69.3 114 37.7
TAR636G1074 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.9e-10 69.3 145 33.8
Haze_24937 Corylus avellana HOM05D007277 ORTHO05D006336 3.8e-10 68.9 105 40.0
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 5.0e-10 68.6 151 33.1
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 5.0e-10 68.6 121 37.2
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 6.5e-10 68.2 116 33.6
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 1.1e-09 67.4 110 36.4
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 1.5e-09 67.0 122 36.1
FAN08G2462 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.5e-09 66.2 51 62.7
Cfa002610 Carpinus fangiana HOM05D007277 ORTHO05D006336 3.2e-09 65.9 125 39.2
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 3.2e-09 65.9 142 33.1
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 4.2e-09 65.5 117 38.5
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 9.4e-09 64.3 109 36.7
QL07p042964 Quercus lobata HOM05D007277 ORTHO05D006336 9.4e-09 64.3 127 36.2
Atru.chr12.1464 Acer truncatum HOM05D007277 ORTHO05D006336 1.2e-08 63.9 133 32.3
Sed0019610 Sechium edule HOM05D014519 ORTHO05D006336 1.2e-08 63.9 104 36.5
TAR371G0786 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.6e-08 63.5 128 34.4
QL10p048018 Quercus lobata HOM05D007277 ORTHO05D337307 6.1e-08 61.6 85 36.5
Cfa002609 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.0e-07 60.8 99 37.4
TAR636G1532 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.0e-07 60.8 125 36.0
ClCG04G011470 Citrullus lanatus HOM05D014519 ORTHO05D006336 1.4e-07 60.5 83 39.8
TAR371G1039 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.8e-07 60.1 123 35.0
TAR636G2604 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.3e-07 59.7 128 35.2
Sed0003907 Sechium edule HOM05D014519 ORTHO05D006336 3.0e-07 59.3 118 32.2
ClCG04G011480 Citrullus lanatus HOM05D014519 ORTHO05D006336 5.2e-07 58.5 99 38.4
QL10p048111 Quercus lobata HOM05D010635 ORTHO05D006336 5.2e-07 58.5 112 31.2
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 6.7e-07 58.2 104 35.6
ClCG04G011490 Citrullus lanatus HOM05D014519 ORTHO05D006336 6.7e-07 58.2 107 33.6
FvH4_5g13141 Fragaria vesca HOM05D007277 ORTHO05D006336 1.2e-06 57.4 78 51.3
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 1.2e-06 57.4 123 34.1
TAR636G0488 Trochodendron aralioides HOM05D000568 ORTHO05D000628 1.5e-06 57.0 141 30.5


User provided reference genes

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