Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.3e-99 364.4 187 100.0
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 1.3e-68 263.5 158 89.9
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 4.0e-46 188.7 177 66.1
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 4.1e-43 178.7 152 61.8
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 8.9e-30 134.4 104 62.5
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 3.4e-29 132.5 108 61.1
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 3.4e-29 132.5 108 61.1
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 5.8e-29 131.7 108 60.2
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 5.8e-29 131.7 108 60.2
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.8e-29 131.7 108 61.1
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.8e-29 131.7 108 60.2
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.5e-29 131.3 142 52.8
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 4.9e-28 128.6 124 53.2
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.4e-27 126.3 108 58.3
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 1.6e-26 123.6 108 57.4
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 1.1e-22 110.9 138 44.9
FAN18G0614 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.8e-22 108.2 85 76.5
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 1.5e-21 107.1 83 63.9
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 1.5e-21 107.1 139 43.9
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 2.0e-21 106.7 118 50.8
FAN08G2286 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.7e-20 103.6 94 50.0
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 8.3e-20 101.3 130 43.8
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 5.4e-19 98.6 110 45.5
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 7.1e-19 98.2 113 44.2
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 2.1e-18 96.7 86 59.3
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 1.0e-17 94.4 112 45.5
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 1.7e-17 93.6 110 46.4
FAN13G0649 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.7e-17 93.6 108 62.0
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 2.3e-17 93.2 112 44.6
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 3.9e-17 92.4 110 42.7
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 8.6e-17 91.3 104 45.2
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 2.5e-16 89.7 112 42.9
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 4.3e-16 89.0 104 43.3
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 7.3e-16 88.2 105 41.9
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 7.3e-16 88.2 117 43.6
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 1.6e-15 87.0 109 46.8
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 4.7e-15 85.5 90 48.9
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 8.1e-15 84.7 142 36.6
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 1.1e-14 84.3 117 42.7
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 1.8e-14 83.6 113 42.5
MD03G1009500 Malus domestica HOM05D007277 ORTHO05D006336 3.1e-14 82.8 120 40.8
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 4.0e-14 82.4 107 45.8
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 1.2e-13 80.9 113 40.7
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.5e-13 80.5 105 41.0
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-13 80.5 107 43.0
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 2.0e-13 80.1 118 39.8
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 2.0e-13 80.1 108 45.4
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 2.6e-13 79.7 115 39.1
FvH4_5g13222 Fragaria vesca HOM05D007277 ORTHO05D006336 3.4e-13 79.3 96 44.8
MD12G1151700 Malus domestica HOM05D007277 ORTHO05D006336 4.4e-13 79.0 114 38.6
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 5.8e-13 78.6 104 39.4
FAN08G2638 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.6e-13 78.2 78 48.7
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 9.9e-13 77.8 110 40.9
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-12 77.4 112 36.6
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 1.7e-12 77.0 109 43.1
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.9e-12 76.3 114 37.7
FvH4_5g13141 Fragaria vesca HOM05D007277 ORTHO05D006336 3.7e-12 75.9 93 51.6
MD12G1151900 Malus domestica HOM05D007277 ORTHO05D006336 3.7e-12 75.9 97 44.3
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 4.9e-12 75.5 105 43.8
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 4.9e-12 75.5 105 40.0
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 4.9e-12 75.5 105 40.0
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 6.4e-12 75.1 109 42.2
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 8.4e-12 74.7 90 47.8
FAN18G0842 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.4e-11 73.9 53 64.2
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 1.9e-11 73.6 112 35.7
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 3.2e-11 72.8 109 41.3
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 4.1e-11 72.4 103 39.8
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 4.1e-11 72.4 91 41.8
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 5.4e-11 72.0 102 37.3
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 7.1e-11 71.6 109 42.2
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.6e-10 70.5 107 38.3
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.1e-10 70.1 105 40.0
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 2.7e-10 69.7 113 34.5
FAN18G1844 Fragaria x ananassa HOM05D007277 ORTHO05D006336 3.5e-10 69.3 85 49.4
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 1.7e-09 67.0 107 35.5
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 3.0e-09 66.2 101 37.6
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 3.9e-09 65.9 85 47.1
ClCG04G011470 Citrullus lanatus HOM05D014519 ORTHO05D006336 3.9e-09 65.9 87 37.9
FAN08G2462 Fragaria x ananassa HOM05D007277 ORTHO05D006336 8.6e-09 64.7 52 55.8
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 1.1e-08 64.3 110 35.5
Sed0003907 Sechium edule HOM05D014519 ORTHO05D006336 1.1e-08 64.3 106 33.0
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.5e-08 63.9 109 38.5
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 2.5e-08 63.2 121 31.4
ClCG04G011480 Citrullus lanatus HOM05D014519 ORTHO05D006336 4.3e-08 62.4 110 33.6
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 4.3e-08 62.4 113 33.6
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 5.6e-08 62.0 106 32.1
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 9.6e-08 61.2 92 32.6
FvH4_5g13223 Fragaria vesca HOM05D007277 ORTHO05D006336 1.2e-07 60.8 93 40.9
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 1.2e-07 60.8 108 32.4
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 1.2e-07 60.8 106 34.0
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 2.1e-07 60.1 90 40.0
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 3.6e-07 59.3 110 37.3
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 3.6e-07 59.3 112 31.2
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 6.2e-07 58.5 88 34.1
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 6.2e-07 58.5 101 36.6
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 1.8e-06 57.0 100 34.0
Atru.chr12.1464 Acer truncatum HOM05D007277 ORTHO05D006336 2.4e-06 56.6 104 32.7
Cfa002610 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.4e-06 56.6 111 36.0
ClCG04G011490 Citrullus lanatus HOM05D014519 ORTHO05D006336 2.4e-06 56.6 106 33.0
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 5.2e-06 55.5 117 31.6
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 8.9e-06 54.7 98 35.7


User provided reference genes

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