Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.5e-38 160.2 80 100.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.3e-18 94.7 128 50.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.3e-17 92.8 128 48.4
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.3e-17 92.8 128 49.2
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.3e-17 92.8 128 49.2
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 8.2e-17 90.1 128 47.7
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.1e-16 89.7 128 48.4
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.4e-16 89.4 128 46.1
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.4e-16 89.4 128 46.9
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.4e-16 89.4 128 47.7
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.8e-16 89.0 128 46.9
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.8e-16 89.0 128 46.9
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.4e-16 88.6 128 46.9
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 2.4e-16 88.6 128 46.9
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.4e-16 88.6 128 46.1
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 4.1e-16 87.8 128 46.9
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 5.3e-16 87.4 128 46.1
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 7.0e-16 87.0 128 45.3
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 7.0e-16 87.0 128 46.1
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 7.0e-16 87.0 128 46.1
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 9.1e-16 86.7 128 46.1
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 9.1e-16 86.7 128 46.9
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.2e-15 86.3 128 45.3
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.2e-15 86.3 128 46.9
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.6e-15 85.9 128 45.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.6e-15 85.9 128 44.5
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.6e-15 85.9 128 44.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.6e-15 85.9 128 45.3
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.0e-15 85.5 128 46.1
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 2.0e-15 85.5 128 46.1
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.6e-15 85.1 128 46.1
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.6e-15 85.1 128 45.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 2.6e-15 85.1 128 46.1
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.5e-15 84.7 128 45.3
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.5e-15 84.7 128 46.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 3.5e-15 84.7 125 45.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 4.5e-15 84.3 128 45.3
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 5.9e-15 84.0 128 45.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 7.7e-15 83.6 128 44.5
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.0e-14 83.2 128 46.1
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.0e-14 83.2 128 44.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.3e-14 82.8 128 45.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.7e-14 82.4 128 45.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.7e-14 82.4 128 43.8
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.2e-14 82.0 128 44.5
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.2e-14 82.0 123 45.5
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.9e-14 81.6 127 43.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.9e-14 81.6 126 45.2
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.9e-14 81.6 128 43.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.9e-14 81.6 128 44.5
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 3.8e-14 81.3 128 43.8
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.8e-14 81.3 128 43.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.8e-14 81.3 128 43.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.8e-14 81.3 128 44.5
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.8e-14 81.3 128 45.3
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.0e-14 80.9 128 43.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 5.0e-14 80.9 129 43.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 6.5e-14 80.5 128 43.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 6.5e-14 80.5 128 43.8
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.5e-14 80.1 128 43.0
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 8.5e-14 80.1 124 45.2
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.5e-14 80.1 128 43.8
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.1e-13 79.7 128 43.0
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.1e-13 79.7 128 43.8
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.5e-13 79.3 128 43.8
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.5e-13 79.3 128 41.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.5e-13 79.3 128 43.8
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.5e-13 79.3 128 44.5
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.5e-13 78.6 128 44.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 2.5e-13 78.6 127 44.9
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 2.5e-13 78.6 128 44.5
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.5e-13 78.6 128 42.2
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 3.2e-13 78.2 128 43.0
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.2e-13 78.2 128 43.8
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 3.2e-13 78.2 127 41.7
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.2e-13 78.2 128 41.4
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 3.2e-13 78.2 128 44.5
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 3.2e-13 78.2 128 44.5
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 3.2e-13 78.2 128 43.0
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.2e-13 78.2 111 45.9
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 5.5e-13 77.4 128 42.2
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.2e-13 77.0 125 44.0
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 7.2e-13 77.0 128 43.8
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 7.2e-13 77.0 128 42.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 9.4e-13 76.6 128 42.2
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.2e-12 76.3 128 39.8
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.2e-12 76.3 141 40.4
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.2e-12 76.3 127 44.1
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 1.2e-12 76.3 125 43.2
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 2.1e-12 75.5 126 42.9
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 3.6e-12 74.7 128 41.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 4.7e-12 74.3 128 40.6
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.1e-12 73.9 125 41.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 6.1e-12 73.9 125 41.6
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 8.0e-12 73.6 127 41.7
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 8.0e-12 73.6 125 42.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 8.0e-12 73.6 125 40.0
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.0e-11 73.2 127 41.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.0e-11 73.2 127 41.7
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.4e-11 72.8 127 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 2.3e-11 72.0 125 41.6
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.3e-11 72.0 122 42.6
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.3e-11 72.0 122 42.6
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.3e-11 72.0 122 42.6
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.3e-11 72.0 122 43.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.3e-11 72.0 125 40.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 5.2e-11 70.9 122 41.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 5.2e-11 70.9 122 41.8
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 5.2e-11 70.9 122 41.8
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 5.2e-11 70.9 122 41.8
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 5.2e-11 70.9 122 41.8
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 6.7e-11 70.5 127 41.7
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 6.7e-11 70.5 122 41.8
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.5e-10 69.3 135 37.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.0e-10 68.9 125 40.8
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 2.6e-10 68.6 155 36.1
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 3.3e-10 68.2 125 41.6
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.7e-09 65.9 31 93.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.2e-09 65.5 31 93.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.2e-09 65.5 31 93.5
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.7e-09 64.7 115 41.7
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.8e-09 64.3 31 93.5
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 4.8e-09 64.3 42 73.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.3e-09 63.9 31 90.3
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 8.2e-09 63.5 30 93.3
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 8.2e-09 63.5 125 36.8
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.8e-08 62.4 30 93.3
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.8e-08 62.4 30 93.3
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-08 62.4 42 66.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-08 62.4 31 87.1
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.4e-08 62.0 31 87.1
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 5.3e-08 60.8 31 83.9
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 7.0e-08 60.5 30 90.0
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 7.0e-08 60.5 31 83.9
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.1e-08 60.1 41 65.9
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.0e-07 58.9 69 44.9
FvH4_5g32031 Fragaria vesca HOM05D004399 ORTHO05D005303 1.3e-06 56.2 49 63.3
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.9e-06 55.1 31 74.2


User provided reference genes

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