Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1693 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.6e-58 229.2 111 100.0
FAN05G0260 Fragaria x ananassa HOM05D003137 ORTHO05D003433 6.0e-50 200.7 97 97.9
FAN09G4236 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.7e-49 199.1 97 96.9
FvH4_6g43560 Fragaria vesca HOM05D003137 ORTHO05D003433 3.9e-49 198.0 97 96.9
RcHm_v2.0_Chr2g0160141 Rosa chinensis HOM05D003137 ORTHO05D003433 6.6e-49 197.2 97 94.8
FAN14G4002 Fragaria x ananassa HOM05D003137 ORTHO05D003433 8.7e-49 196.8 97 95.9
Prupe.3G220700 Prunus persica HOM05D003137 ORTHO05D003433 7.3e-48 193.7 97 92.8
MD17G1092500 Malus domestica HOM05D003137 ORTHO05D003433 2.8e-47 191.8 97 90.7
MD09G1104800 Malus domestica HOM05D003137 ORTHO05D003433 3.6e-47 191.4 97 90.7
CSS0047433 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 4.7e-47 191.0 97 89.7
CANSAT64G2088 Cannabis sativa HOM05D003137 ORTHO05D003433 8.1e-47 190.3 97 91.8
CAN.G1126.28 Capsicum annuum HOM05D003137 ORTHO05D003433 1.1e-46 189.9 97 89.7
Dinv39684 Davidia involucrata HOM05D003137 ORTHO05D003433 1.1e-46 189.9 97 88.7
Atru.chr6.3141 Acer truncatum HOM05D003137 ORTHO05D003433 1.8e-46 189.1 97 89.7
Actinidia11210 Actinidia chinensis HOM05D003137 ORTHO05D003433 1.8e-46 189.1 97 89.7
PGR042G2833 Punica granatum HOM05D003137 ORTHO05D003433 1.8e-46 189.1 97 89.7
Sed0002741 Sechium edule HOM05D003137 ORTHO05D003433 1.8e-46 189.1 97 90.7
Thecc.02G162600 Theobroma cacao HOM05D003137 ORTHO05D003433 2.4e-46 188.7 97 89.7
MELO3C019066.2 Cucumis melo HOM05D003137 ORTHO05D003433 3.1e-46 188.3 97 89.7
CsaV3_4G029720 Cucumis sativus L. HOM05D003137 ORTHO05D003433 3.1e-46 188.3 97 89.7
Nn4g22018 Nelumbo nucifera HOM05D003137 ORTHO05D003433 3.1e-46 188.3 97 90.7
Nn7g38434 Nelumbo nucifera HOM05D003137 ORTHO05D003433 3.1e-46 188.3 97 90.7
Aqoxy7G03817 Aquilegia oxysepala HOM05D003137 ORTHO05D003433 5.2e-46 187.6 97 89.7
Ciclev10015128m.g Citrus clementina HOM05D003137 ORTHO05D003433 5.2e-46 187.6 97 87.6
Eucgr.K00863 Eucalyptus grandis HOM05D003137 ORTHO05D003433 5.2e-46 187.6 97 88.7
GSVIVG01030627001 Vitis vinifera HOM05D003137 ORTHO05D003433 5.2e-46 187.6 97 88.7
AUR62035796 Chenopodium quinoa HOM05D003137 ORTHO05D003433 9.0e-46 186.8 104 83.7
Lj8C37T5 Lonicera japonica HOM05D003137 ORTHO05D003433 9.0e-46 186.8 97 87.6
Potri.017G039000 Populus trichocarpa HOM05D003137 ORTHO05D003433 9.0e-46 186.8 97 88.7
Migut.C00698 Erythranthe guttata HOM05D003137 ORTHO05D003433 1.2e-45 186.4 97 88.7
Manes.13G073300 Manihot esculenta HOM05D003137 ORTHO05D003433 1.2e-45 186.4 97 87.6
QL08p033861 Quercus lobata HOM05D003137 ORTHO05D003433 1.5e-45 186.0 97 87.6
Solyc04g080050.4 Solanum lycopersicum HOM05D003137 ORTHO05D003433 1.5e-45 186.0 97 86.6
Sopen04g033640 Solanum pennellii HOM05D003137 ORTHO05D003433 1.5e-45 186.0 97 86.6
PGSC0003DMG402027860 Solanum tuberosum HOM05D003137 ORTHO05D003433 1.5e-45 186.0 97 86.6
Medtr7g076560 Medicago truncatula HOM05D003137 ORTHO05D003433 2.0e-45 185.7 97 86.6
TWI18G1074 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 2.0e-45 185.7 97 88.7
Actinidia32508 Actinidia chinensis HOM05D003137 ORTHO05D003433 2.6e-45 185.3 97 86.6
AUR62027561 Chenopodium quinoa HOM05D003137 ORTHO05D003433 3.4e-45 184.9 96 88.5
Sp7g06520 Schrenkiella parvula HOM05D003137 ORTHO05D003433 3.4e-45 184.9 97 86.6
Potri.007G121400 Populus trichocarpa HOM05D003137 ORTHO05D003433 4.4e-45 184.5 97 87.6
CSS0004570 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 5.8e-45 184.1 97 88.7
Phvul.008G069800 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 5.8e-45 184.1 97 86.6
SGA_v2.0_scaffold24G10245 Striga asiatica HOM05D003137 ORTHO05D003433 5.8e-45 184.1 96 88.5
VMungo1383G1713 Vigna mungo HOM05D003137 ORTHO05D003433 5.8e-45 184.1 97 86.6
AL7G44570 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
AT5G35730 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
BcaB06g26976 Brassica carinata HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
BcaC02g09490 Brassica carinata HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
A04p09900 Brassica napus HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
C04p43380 Brassica napus HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
BolC4t25916H Brassica oleracea HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
BraA04t16653Z Brassica rapa HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
Carub.0007s3147 Capsella rubella HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
CARHR216920 Cardamine hirsuta HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
Thhalv10004243m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 7.6e-45 183.7 97 85.6
arahy.Tifrunner.gnm1.ann1.VG7JT5 Arachis hypogaea HOM05D003137 ORTHO05D003433 9.9e-45 183.3 96 85.4
MSTRG.25153 Avicennia marina HOM05D003137 ORTHO05D003433 9.9e-45 183.3 97 85.6
Gohir.A01G013400 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.3e-44 183.0 97 86.6
PSO782G4462 Papaver somniferum HOM05D003137 ORTHO05D003433 1.3e-44 183.0 97 84.5
COL.COLO4_12992 Corchorus olitorius HOM05D003137 ORTHO05D003433 1.7e-44 182.6 97 86.6
Glyma.09G263700 Glycine max HOM05D003137 ORTHO05D003433 1.7e-44 182.6 97 85.6
Gorai.002G016400 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.7e-44 182.6 97 85.6
CiPaw.03G163200 Carya illinoinensis HOM05D003137 ORTHO05D003433 2.9e-44 181.8 97 86.6
ECA233G5037 Erigeron canadensis HOM05D003137 ORTHO05D003433 2.9e-44 181.8 97 85.6
PSO478G0754 Papaver somniferum HOM05D003137 ORTHO05D003433 2.9e-44 181.8 97 84.5
Thecc.01G369700 Theobroma cacao HOM05D003137 ORTHO05D003433 2.9e-44 181.8 97 85.6
EL10Ac8g19786 Beta vulgaris HOM05D003137 ORTHO05D003433 3.8e-44 181.4 97 85.6
Duzib133G1508 Durio zibethinus HOM05D003137 ORTHO05D003433 3.8e-44 181.4 98 85.7
Zm00001eb135290 Zea mays HOM05D003137 ORTHO05D003433 3.8e-44 181.4 97 84.5
Aa31LG5G17560 Aethionema arabicum HOM05D003137 ORTHO05D003433 4.9e-44 181.0 97 82.5
ATR0787G213 Amborella trichopoda HOM05D003137 ORTHO05D003433 4.9e-44 181.0 97 86.6
Gohir.D01G014700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 4.9e-44 181.0 97 84.5
Gorai.008G116200 Gossypium raimondii HOM05D003137 ORTHO05D003433 4.9e-44 181.0 97 83.5
Ah.09g232930 Amaranthus hybridus HOM05D001132 ORTHO05D003433 6.4e-44 180.6 100 82.0
CiPaw.04G118000 Carya illinoinensis HOM05D003137 ORTHO05D003433 6.4e-44 180.6 97 84.5
Ciclev10020261m.g Citrus clementina HOM05D003137 ORTHO05D003433 6.4e-44 180.6 97 83.5
Psat3g112160 Pisum sativum HOM05D003137 ORTHO05D003433 6.4e-44 180.6 97 82.5
THA.LOC104802010 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 6.4e-44 180.6 97 83.5
THA.LOC104827598 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 6.4e-44 180.6 97 85.6
COL.COLO4_12634 Corchorus olitorius HOM05D003137 ORTHO05D003433 8.4e-44 180.3 97 84.5
Lj1g0004776 Lotus japonicus HOM05D003137 ORTHO05D003433 8.4e-44 180.3 97 83.5
Duzib138G0678 Durio zibethinus HOM05D003137 ORTHO05D003433 1.1e-43 179.9 97 84.5
Gohir.D11G088700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.1e-43 179.9 97 82.5
Lsat_1_v5_gn_8_129381 Lactuca sativa HOM05D003137 ORTHO05D003433 1.1e-43 179.9 97 84.5
Hma1.2p1_0613F.1_g189210 Hydrangea macrophylla HOM05D003137 ORTHO05D003433 1.4e-43 179.5 99 84.8
Gohir.A12G103350 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.9e-43 179.1 97 82.5
Sc21g0001670 Simmondsia chinensis HOM05D003137 ORTHO05D003433 1.9e-43 179.1 97 82.5
Sopen07g012160 Solanum pennellii HOM05D003137 ORTHO05D003433 1.9e-43 179.1 96 84.4
Rhsim07G0131000 Rhododendron simsii HOM05D003137 ORTHO05D003433 2.4e-43 178.7 97 83.5
Cc10_g03200 Coffea canephora HOM05D003137 ORTHO05D003433 3.2e-43 178.3 97 82.5
Gorai.007G094800 Gossypium raimondii HOM05D003137 ORTHO05D003433 3.2e-43 178.3 97 81.4
Lalb_Chr01g0021071 Lupinus albus HOM05D003137 ORTHO05D003433 3.2e-43 178.3 97 82.5
Os12g0595000 Oryza sativa ssp. japonica HOM05D003137 ORTHO05D003433 3.2e-43 178.3 97 82.5
SHI10274 Sapria himalayana HOM05D003137 ORTHO05D003433 3.2e-43 178.3 96 86.5
Solyc07g022830.3 Solanum lycopersicum HOM05D003137 ORTHO05D003433 3.2e-43 178.3 96 83.3
Glyma.18G228400 Glycine max HOM05D003137 ORTHO05D003433 5.4e-43 177.6 97 83.5
HanXRQChr17g0560951 Helianthus annuus HOM05D003137 ORTHO05D003433 7.1e-43 177.2 97 83.5
Oeu016738.1 Olea europaea HOM05D003137 ORTHO05D003433 9.3e-43 176.8 97 84.5
Gohir.A11G084600 Gossypium hirsutum HOM05D003137 ORTHO05D003433 4.6e-42 174.5 97 80.4
Phvul.005G113400 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 4.6e-42 174.5 97 81.4
Glyma.13G306500 Glycine max HOM05D003137 ORTHO05D003433 7.8e-42 173.7 97 80.4
Prupe.2G153500 Prunus persica HOM05D003137 ORTHO05D003433 7.8e-42 173.7 98 78.6
Glyma.12G196001 Glycine max HOM05D003137 ORTHO05D003433 1.3e-41 172.9 97 79.4
Lalb_Chr01g0005541 Lupinus albus HOM05D003137 ORTHO05D003433 1.7e-41 172.6 97 81.4
TPR.G4191 Trifolium pratense HOM05D003137 ORTHO05D003433 1.7e-41 172.6 97 79.4
HPP92_010507 Vanilla planifolia HOM05D003137 ORTHO05D003433 1.7e-41 172.6 97 82.5
arahy.Tifrunner.gnm1.ann1.HIPE1N Arachis hypogaea HOM05D003137 ORTHO05D003433 3.9e-41 171.4 96 80.2
arahy.Tifrunner.gnm1.ann1.U40R6G Arachis hypogaea HOM05D003137 ORTHO05D003433 3.9e-41 171.4 96 80.2
VMungo1080G0481 Vigna mungo HOM05D003137 ORTHO05D003433 5.1e-41 171.0 96 81.2
Medtr2g088870 Medicago truncatula HOM05D003137 ORTHO05D003433 1.1e-40 169.9 97 78.4
Lj3g0011099 Lotus japonicus HOM05D003137 ORTHO05D003433 4.3e-40 167.9 97 78.4
Nn6g34282 Nelumbo nucifera HOM05D003137 ORTHO05D003433 4.3e-40 167.9 97 80.4
CDE09G0481 Ceratophyllum demersum HOM05D003137 ORTHO05D003433 9.6e-40 166.8 97 78.4
Lalb_Chr24g0393061 Lupinus albus HOM05D003137 ORTHO05D003433 1.5e-37 159.5 98 75.5
THA.LOC104800980 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 3.4e-37 158.3 97 76.3
SEGI_18577 Sequoiadendron giganteum HOM05D003137 ORTHO05D003433 2.9e-36 155.2 98 72.4
CARHR126140 Cardamine hirsuta HOM05D003137 ORTHO05D003433 4.9e-36 154.5 97 69.1
AT2G32295 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 1.4e-35 152.9 97 68.0
BolC9t58293H Brassica oleracea HOM05D003137 ORTHO05D003433 1.4e-35 152.9 97 69.1
Aa31LG5G4220 Aethionema arabicum HOM05D003137 ORTHO05D003433 1.9e-35 152.5 97 68.0
BcaB01g03986 Brassica carinata HOM05D003137 ORTHO05D003433 3.2e-35 151.8 97 68.0
BcaC01g05910 Brassica carinata HOM05D003137 ORTHO05D003433 3.2e-35 151.8 97 68.0
C03p21160 Brassica napus HOM05D003137 ORTHO05D003433 3.2e-35 151.8 97 68.0
BolC3t14499H Brassica oleracea HOM05D003137 ORTHO05D003433 3.2e-35 151.8 97 68.0
AL4G27690 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 5.4e-35 151.0 97 67.0
A03p18130 Brassica napus HOM05D003137 ORTHO05D003433 7.1e-35 150.6 97 68.0
BraA03t11072Z Brassica rapa HOM05D003137 ORTHO05D003433 7.1e-35 150.6 97 68.0
Carub.0004s1367 Capsella rubella HOM05D003137 ORTHO05D003433 7.1e-35 150.6 97 67.0
Thhalv10016614m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 1.6e-34 149.4 97 66.0
Sp4g14700 Schrenkiella parvula HOM05D003137 ORTHO05D003433 3.5e-34 148.3 97 66.0
C04p61380 Brassica napus HOM05D003137 ORTHO05D003433 5.1e-33 144.4 100 64.0
C09p54190 Brassica napus HOM05D003137 ORTHO05D003433 3.3e-32 141.7 119 57.1
TAR365G0865 Trochodendron aralioides HOM05D003137 ORTHO05D003433 5.6e-32 141.0 72 83.3
C02p21320 Brassica napus HOM05D003137 ORTHO05D003433 7.4e-32 140.6 96 65.6
Gohir.D12G106800 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.4e-30 136.3 87 70.1
Pp3c9_25080 Physcomitrium patens HOM05D003137 ORTHO05D003433 4.0e-30 134.8 95 62.1
BolC5t32375H Brassica oleracea HOM05D003137 ORTHO05D003433 6.9e-30 134.0 89 64.0
BolC4t27622H Brassica oleracea HOM05D003137 ORTHO05D003433 4.5e-29 131.3 89 62.9
Sabra17G0026100 Salix brachista HOM05D003137 ORTHO05D003433 5.8e-29 131.0 91 68.1
Peaxi162Scf00057g00421 Petunia axillaris HOM05D003137 ORTHO05D003433 1.7e-28 129.4 91 65.9
Pp3c15_24780 Physcomitrium patens HOM05D003137 ORTHO05D003433 2.2e-28 129.0 95 60.0
Cpa.g.sc8.238 Carica papaya HOM05D003137 ORTHO05D003433 3.8e-28 128.3 91 65.9
Nitab4.5_0000110g0420 Nicotiana tabacum HOM05D003137 ORTHO05D003433 1.1e-27 126.7 78 75.6
FAN02G1637 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.4e-27 126.3 77 81.8
Mapoly0060s0006 Marchantia polymorpha HOM05D003137 ORTHO05D003433 1.9e-27 125.9 96 60.4
SalBow7G2186 Salvia bowleyana HOM05D003137 ORTHO05D003433 1.9e-27 125.9 91 65.9
ClCG04G004390 Citrullus lanatus HOM05D003137 ORTHO05D003433 7.1e-27 124.0 73 74.0
MBI13_g32436_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 7.1e-27 124.0 91 64.8
SalBow6G6965 Salvia bowleyana HOM05D003137 ORTHO05D003433 7.1e-27 124.0 91 64.8
SGA_v2.0_scaffold48G18065 Striga asiatica HOM05D003137 ORTHO05D003433 7.1e-27 124.0 91 64.8
Duzib132G0891 Durio zibethinus HOM05D003137 ORTHO05D003433 9.3e-27 123.6 73 76.7
Cfa014440 Carpinus fangiana HOM05D003137 ORTHO05D003433 1.2e-26 123.2 86 69.8
PGSC0003DMG400031494 Solanum tuberosum HOM05D003137 ORTHO05D003433 1.2e-26 123.2 85 64.7
BraA03t13076Z Brassica rapa HOM05D003137 ORTHO05D003433 2.7e-26 122.1 87 60.9
Dinv15027 Davidia involucrata HOM05D003137 ORTHO05D003433 2.7e-26 122.1 64 84.4
Haze_12901 Corylus avellana HOM05D003137 ORTHO05D003433 6.0e-26 120.9 66 81.8
Nitab4.5_0003246g0110 Nicotiana tabacum HOM05D003137 ORTHO05D003433 7.9e-26 120.6 65 86.2
vmacro14192 Vaccinium macrocarpon HOM05D003137 ORTHO05D003433 3.0e-25 118.6 91 62.6
TWI75G1854 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 5.1e-25 117.9 62 87.1
Ah.14g086720 Amaranthus hybridus HOM05D003137 ORTHO05D003433 1.1e-24 116.7 91 60.4
Mapoly0008s0085 Marchantia polymorpha HOM05D003137 ORTHO05D003433 1.1e-24 116.7 92 56.5
DCAR_020205 Daucus carota HOM05D003137 ORTHO05D003433 1.9e-24 115.9 66 78.8
CAN.G655.3 Capsicum annuum HOM05D003137 ORTHO05D003433 4.3e-24 114.8 64 75.0
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 4.3e-24 114.8 81 70.4
A03p39250 Brassica napus HOM05D001420 ORTHO05D003433 2.8e-23 112.1 120 45.8
A01p22150 Brassica napus HOM05D001420 ORTHO05D003433 4.8e-23 111.3 120 45.8
MBI11_g02542_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 8.2e-23 110.5 99 57.6
arahy.Tifrunner.gnm1.ann1.D87ERS Arachis hypogaea HOM05D003137 ORTHO05D003433 1.8e-22 109.4 69 71.0
RcHm_v2.0_Chr1g0352051 Rosa chinensis HOM05D003137 ORTHO05D003433 2.0e-21 105.9 88 53.4
FAN07G0373 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.0e-20 103.6 64 71.9
FAN12G2421 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.9e-19 99.4 66 69.7
C08p40320 Brassica napus HOM05D003137 ORTHO05D003433 2.5e-19 99.0 97 47.4
BolC8t51600H Brassica oleracea HOM05D003137 ORTHO05D003433 2.5e-19 99.0 97 47.4
AagrBONN_evm.TU.Sc2ySwM_117.2028 Anthoceros agrestis HOM05D003137 ORTHO05D003433 5.5e-19 97.8 97 49.5
SMO367G1117 Selaginella moellendorffii HOM05D003137 ORTHO05D003433 5.5e-19 97.8 65 63.1
C08p43710 Brassica napus HOM05D003137 ORTHO05D003433 7.1e-19 97.4 97 50.5
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-17 92.4 89 46.1
RcHm_v2.0_Chr2g0127371 Rosa chinensis HOM05D003137 ORTHO05D003433 7.4e-16 87.4 64 60.9
BcaC01g01866 Brassica carinata HOM05D003137 ORTHO05D003433 3.7e-15 85.1 82 42.7
Hund21479 Selenicereus undatus HOM05D003137 ORTHO05D003433 2.0e-13 79.3 73 56.2
Atru.chr5.388 Acer truncatum HOM05D003137 ORTHO05D003433 3.9e-09 65.1 32 90.6
Psat5g265400 Pisum sativum HOM05D003137 ORTHO05D003433 8.8e-09 63.9 89 42.7
FvH4_4g13682 Fragaria vesca HOM05D003137 ORTHO05D003433 2.5e-08 62.4 34 82.4
PSO017G4251 Papaver somniferum HOM05D068066 ORTHO05D003433 1.7e-07 59.7 81 29.6
PSO437G0001 Papaver somniferum HOM05D068066 ORTHO05D003433 1.7e-07 59.7 81 29.6


User provided reference genes

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