Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.8e-163 578.2 303 100.0
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.6e-159 564.3 303 96.7
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 2.1e-150 535.8 347 84.4
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.4e-141 505.8 343 77.8
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 4.4e-103 378.6 346 62.1
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.8e-96 356.7 348 59.5
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.7e-94 349.0 343 57.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 3.6e-89 332.4 348 55.2
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 9.8e-87 324.3 314 62.7
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 7.0e-85 318.2 349 54.4
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.9e-83 312.4 343 54.5
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 7.3e-82 308.1 340 53.8
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 9.5e-82 307.8 344 51.7
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.1e-81 306.6 346 54.6
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.2e-81 305.1 336 53.6
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 7.5e-79 298.1 369 49.6
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.9e-77 293.5 337 51.6
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.6e-76 290.4 339 53.1
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.7e-76 289.7 339 53.1
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 6.6e-75 285.0 344 52.6
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 7.3e-74 281.6 344 50.0
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 7.3e-74 281.6 349 49.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.2e-73 280.8 347 48.7
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 3.1e-72 276.2 347 49.9
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 3.4e-71 272.7 344 51.2
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.9e-70 268.9 345 46.4
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.9e-69 266.9 315 52.7
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 4.1e-69 265.8 349 47.6
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 5.4e-69 265.4 346 48.8
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 9.2e-69 264.6 346 45.7
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 3.5e-68 262.7 345 48.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.5e-68 262.7 339 50.4
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 3.5e-68 262.7 343 49.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 4.6e-68 262.3 346 48.6
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 6.0e-68 261.9 311 49.2
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 9.5e-66 254.6 308 49.4
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 9.5e-66 254.6 300 48.7
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.6e-65 253.8 342 46.8
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.8e-65 253.1 342 48.5
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 6.2e-65 251.9 348 48.3
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.2e-63 247.7 322 48.4
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-63 247.7 317 47.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.2e-63 247.7 317 47.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.0e-63 246.9 320 46.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.0e-63 246.9 389 42.4
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 2.6e-63 246.5 322 47.2
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.8e-63 245.4 320 49.1
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.3e-62 244.2 321 49.2
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.2e-62 243.4 320 47.2
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.2e-62 243.4 320 47.8
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 3.8e-62 242.7 314 47.5
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 3.8e-62 242.7 314 47.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 2.4e-61 240.0 313 49.5
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 3.2e-61 239.6 338 44.7
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.1e-61 239.2 350 44.9
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 9.2e-61 238.0 316 46.2
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 3.5e-60 236.1 345 44.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 3.0e-59 233.0 344 43.9
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.9e-59 232.6 353 43.3
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.9e-58 230.3 340 43.2
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 3.3e-58 229.6 318 48.4
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.3e-58 229.2 315 46.7
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 5.6e-58 228.8 346 42.2
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 7.3e-58 228.4 341 44.0
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 8.1e-57 224.9 209 58.4
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.1e-56 224.6 347 43.2
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-56 224.6 190 63.2
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.8e-56 223.8 379 44.1
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.4e-56 223.4 340 45.6
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 4.0e-56 222.6 318 43.7
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 9.0e-56 221.5 129 88.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 2.6e-55 219.9 237 53.6
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.4e-55 219.5 311 46.0
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 3.8e-54 216.1 315 45.4
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 3.8e-54 216.1 315 45.4
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 4.9e-54 215.7 346 41.3
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 7.1e-53 211.8 313 45.7
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.6e-52 210.7 342 41.5
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 4.6e-52 209.1 351 41.6
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 3.0e-51 206.5 356 40.7
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 5.1e-51 205.7 340 41.5
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.5e-50 203.4 274 48.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.8e-49 199.1 129 80.6
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 8.1e-49 198.4 353 38.8
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 8.1e-49 198.4 340 38.8
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.4e-47 193.0 364 39.3
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.3e-46 191.0 212 50.9
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.1e-45 188.0 273 42.9
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-45 188.0 215 47.4
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.3e-43 181.0 200 49.5
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.9e-42 177.2 201 48.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 3.3e-42 176.4 206 51.0
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 4.5e-39 166.0 276 40.9
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.5e-39 166.0 211 46.9
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 5.8e-39 165.6 131 64.1
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-38 164.5 208 50.0
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.2e-38 163.7 310 38.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.6e-36 157.5 138 63.0
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 2.1e-36 157.1 244 41.0
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.3e-35 153.7 344 35.2
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.3e-35 153.7 344 35.5
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.9e-35 152.9 343 35.9
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.9e-32 142.1 101 72.3
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.3e-30 137.9 208 38.5
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.8e-30 136.3 81 88.9
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.9e-29 134.0 199 43.7
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.2e-29 132.9 284 32.4
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 4.2e-29 132.9 86 81.4
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.6e-28 131.0 292 33.9
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 7.9e-28 128.6 311 32.5
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-27 127.9 279 34.1
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-25 121.3 115 60.9
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 8.2e-25 118.6 197 39.6
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 8.2e-25 118.6 226 38.1
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.4e-24 117.9 238 37.0
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 4.1e-24 116.3 190 39.5
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.4e-23 113.2 333 30.9
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 4.5e-23 112.8 292 32.5
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 4.5e-23 112.8 229 38.0
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 8.5e-22 108.6 203 36.0
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.9e-21 107.5 250 32.8
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.2e-21 106.3 245 30.2
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 7.2e-21 105.5 104 54.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.6e-20 104.4 251 31.1
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-20 104.0 114 51.8
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.0e-19 100.1 314 29.6
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.1e-18 98.2 204 34.3
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.5e-18 97.8 211 33.6
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.5e-18 97.1 73 71.2
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 4.8e-17 92.8 245 29.8
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.0e-15 87.4 228 33.3
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 3.4e-15 86.7 202 31.7
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 4.5e-15 86.3 272 30.9
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 5.9e-15 85.9 87 57.5
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-13 81.6 202 31.2
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 3.2e-13 80.1 315 26.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 7.2e-13 79.0 179 33.0
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-12 77.8 45 80.0
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.1e-12 77.4 170 33.5
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 3.9e-11 73.2 84 51.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 5.7e-10 69.3 172 34.3
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.8e-08 64.3 92 41.3
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.1e-08 63.2 35 80.0
MELO3C034996.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.0e-07 60.8 41 73.2
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.8e-06 56.6 35 71.4


User provided reference genes

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