Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.1e-89 333.2 164 100.0
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.2e-88 328.9 164 98.2
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.7e-80 302.8 152 97.4
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 2.2e-80 302.4 152 96.7
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.7e-80 301.6 152 96.7
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 2.0e-78 295.8 152 94.1
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.5e-77 290.8 163 89.6
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.5e-73 279.6 152 89.5
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 3.3e-73 278.5 152 88.2
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 6.3e-72 274.2 152 88.8
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 2.9e-69 265.4 152 84.2
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 3.6e-67 258.5 152 83.6
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.4e-66 256.5 158 79.7
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 2.3e-66 255.8 152 82.2
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 5.2e-66 254.6 151 80.8
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.0e-65 252.7 152 82.2
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 7.5e-65 250.8 160 78.8
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 7.5e-65 250.8 156 79.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 1.7e-64 249.6 152 81.6
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.7e-64 249.6 152 80.9
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 6.3e-64 247.7 155 78.1
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 8.2e-64 247.3 153 79.7
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.1e-63 246.9 156 78.8
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 1.8e-63 246.1 151 80.1
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 1.8e-63 246.1 155 78.1
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 2.4e-63 245.7 153 79.7
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 4.1e-63 245.0 152 77.6
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 4.1e-63 245.0 151 78.8
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 5.3e-63 244.6 152 77.6
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 7.0e-63 244.2 151 78.8
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 9.1e-63 243.8 153 78.4
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.2e-62 243.4 152 77.6
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.2e-62 243.4 153 76.5
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.0e-62 242.7 151 78.1
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.7e-62 242.3 163 76.1
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 3.5e-62 241.9 152 76.3
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.5e-62 241.9 153 79.7
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 4.5e-62 241.5 153 77.8
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 4.5e-62 241.5 151 78.8
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 5.9e-62 241.1 151 79.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 5.9e-62 241.1 155 77.4
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.0e-61 240.4 153 78.4
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.7e-61 239.6 151 80.1
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 2.9e-61 238.8 174 71.3
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 3.8e-61 238.4 152 75.0
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 3.8e-61 238.4 153 78.4
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 3.8e-61 238.4 154 74.7
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 6.5e-61 237.7 152 73.7
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.1e-60 236.9 170 70.6
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 1.5e-60 236.5 154 74.0
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.5e-60 235.7 155 71.6
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.5e-60 235.7 152 76.3
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 4.2e-60 235.0 154 73.4
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 4.2e-60 235.0 153 75.8
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 4.2e-60 235.0 183 66.1
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 7.2e-60 234.2 153 74.5
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 9.4e-60 233.8 154 73.4
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.2e-59 233.4 153 77.1
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.6e-59 233.0 152 73.0
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 6.1e-59 231.1 156 75.0
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.4e-58 229.9 152 74.3
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 1.4e-58 229.9 155 72.3
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 1.8e-58 229.6 152 76.3
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.8e-58 229.6 152 73.7
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 3.0e-58 228.8 152 75.0
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 3.0e-58 228.8 153 71.2
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 6.8e-58 227.6 181 64.1
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 8.8e-58 227.3 152 75.0
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 8.8e-58 227.3 152 75.0
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 8.8e-58 227.3 163 68.7
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 8.8e-58 227.3 151 71.5
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 2.0e-57 226.1 143 76.9
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.6e-57 225.7 151 72.8
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.6e-57 225.7 187 64.7
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 2.6e-57 225.7 155 71.6
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 7.5e-57 224.2 152 73.7
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 7.5e-57 224.2 152 73.7
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 7.5e-57 224.2 152 73.7
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 9.8e-57 223.8 145 75.9
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 9.8e-57 223.8 150 70.0
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 9.8e-57 223.8 153 70.6
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 6.3e-56 221.1 152 71.1
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 1.4e-55 219.9 157 66.9
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 1.8e-55 219.5 156 72.4
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 2.4e-55 219.2 151 72.8
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 2.4e-55 219.2 151 72.8
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 2.4e-55 219.2 151 72.8
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 2.4e-55 219.2 151 72.8
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 3.1e-55 218.8 151 72.2
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 3.1e-55 218.8 152 72.4
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 3.1e-55 218.8 143 75.5
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 4.1e-55 218.4 151 67.5
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 5.4e-55 218.0 151 71.5
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 7.0e-55 217.6 151 72.2
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 7.0e-55 217.6 132 82.6
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 1.2e-54 216.9 151 71.5
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.6e-54 216.5 186 61.3
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 3.5e-54 215.3 151 71.5
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 3.5e-54 215.3 147 68.0
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 1.0e-53 213.8 143 74.8
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.7e-53 213.0 146 70.5
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 1.7e-53 213.0 146 70.5
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 5.0e-53 211.5 195 59.0
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 6.5e-53 211.1 152 69.1
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 2.5e-52 209.1 152 66.4
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 4.2e-52 208.4 153 70.6
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 4.2e-52 208.4 131 78.6
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 9.5e-52 207.2 224 52.2
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 6.1e-51 204.5 131 79.4
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 8.9e-50 200.7 145 71.0
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 4.4e-49 198.4 165 63.0
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 4.4e-49 198.4 176 59.7
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 5.7e-49 198.0 151 66.9
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 9.8e-49 197.2 149 65.8
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 2.8e-48 195.7 152 65.8
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 3.7e-48 195.3 164 59.8
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 6.3e-48 194.5 175 58.9
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 8.3e-48 194.1 153 65.4
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 1.4e-47 193.4 152 65.1
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.4e-47 193.4 152 65.1
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.4e-47 193.4 152 65.1
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.8e-47 193.0 160 65.0
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 2.4e-47 192.6 111 81.1
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 5.4e-47 191.4 160 64.4
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.6e-46 189.9 188 54.3
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 3.5e-46 188.7 197 57.4
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.3e-45 186.8 148 64.9
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 1.7e-45 186.4 110 79.1
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 1.7e-45 186.4 150 63.3
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 5.0e-45 184.9 153 62.7
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.1e-44 183.7 133 69.9
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 1.9e-44 183.0 171 57.3
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.9e-44 183.0 106 82.1
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 3.3e-44 182.2 110 75.5
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 3.3e-44 182.2 110 75.5
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 4.3e-44 181.8 110 78.2
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 5.6e-44 181.4 110 77.3
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.6e-44 181.4 110 77.3
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 4.7e-43 178.3 110 75.5
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 4.7e-43 178.3 110 79.1
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 1.0e-42 177.2 110 75.5
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 4.0e-42 175.3 144 66.0
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 3.4e-41 172.2 151 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.3e-40 170.2 131 60.3
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.3e-40 170.2 150 58.0
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 1.7e-40 169.9 152 61.2
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 6.4e-40 167.9 150 58.0
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 6.4e-40 167.9 128 65.6
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 1.4e-39 166.8 110 70.0
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 8.6e-37 157.5 131 61.1
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 9.5e-36 154.1 143 58.7
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 1.2e-35 153.7 149 50.3
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 1.1e-34 150.6 74 98.6
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 5.8e-33 144.8 101 68.3
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 5.8e-33 144.8 153 52.9
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.1e-30 136.3 132 56.1
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 3.1e-26 122.5 149 40.9
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 7.5e-25 117.9 106 60.4
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 2.0e-17 93.2 135 37.8
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.2e-16 89.7 55 74.5
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 2.2e-16 89.7 52 82.7
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.1e-15 87.4 114 42.1
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 2.3e-13 79.7 52 71.2
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 1.9e-12 76.6 149 30.2
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 8.1e-11 71.2 152 32.9
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 1.8e-10 70.1 50 70.0
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.2e-09 67.4 59 54.2
Oeu062031.1 Olea europaea HOM05D003442 ORTHO05D004005 1.9e-07 60.1 48 60.4
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 2.4e-07 59.7 43 67.4
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 4.2e-07 58.9 43 62.8
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.3e-07 57.8 42 61.9
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 1.2e-06 57.4 44 65.9


User provided reference genes

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