Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1636 Fragaria x ananassa HOM05D002091 ORTHO05D002140 8.3e-38 159.8 79 100.0
FvH4_3g08700 Fragaria vesca HOM05D002091 ORTHO05D002140 2.4e-16 88.6 44 95.5
FvH4_5g21460 Fragaria vesca HOM05D002091 ORTHO05D002140 2.4e-16 88.6 69 68.1
FAN11G3551 Fragaria x ananassa HOM05D002091 ORTHO05D002140 2.4e-16 88.6 44 95.5
FAN16G1464 Fragaria x ananassa HOM05D002091 ORTHO05D002140 2.4e-16 88.6 44 95.5
FAN18G2905 Fragaria x ananassa HOM05D002091 ORTHO05D002140 2.4e-16 88.6 69 68.1
FAN21G3816 Fragaria x ananassa HOM05D002091 ORTHO05D002140 4.0e-16 87.8 44 93.2
RcHm_v2.0_Chr5g0009081 Rosa chinensis HOM05D002091 ORTHO05D002140 9.0e-16 86.7 44 90.9
FAN08G0686 Fragaria x ananassa HOM05D002091 ORTHO05D002140 2.0e-15 85.5 44 90.9
FAN21G3975 Fragaria x ananassa HOM05D000422 ORTHO05D011804 2.6e-15 85.1 44 90.9
FvH4_3g02420 Fragaria vesca HOM05D002091 ORTHO05D002140 5.8e-15 84.0 69 65.2
Cfa000522 Carpinus fangiana HOM05D002091 ORTHO05D002140 7.9e-12 73.6 77 53.2
CiPaw.09G063100 Carya illinoinensis HOM05D002091 ORTHO05D002140 5.1e-11 70.9 74 54.1
Ciclev10017075m.g Citrus clementina HOM05D002091 ORTHO05D002140 1.1e-10 69.7 67 56.7
AL4G29640 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 1.5e-10 69.3 46 69.6
AT2G33847 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 1.5e-10 69.3 46 69.6
Haze_06388 Corylus avellana HOM05D002091 ORTHO05D002140 1.5e-10 69.3 43 76.7
Sabra11G0039200 Salix brachista HOM05D002091 ORTHO05D002140 2.5e-10 68.6 75 48.0
Atru.chr10.1805 Acer truncatum HOM05D002091 ORTHO05D002140 3.3e-10 68.2 38 78.9
CARHR127980 Cardamine hirsuta HOM05D002091 ORTHO05D002140 3.3e-10 68.2 53 64.2
Prupe.4G051800 Prunus persica HOM05D002091 ORTHO05D002140 3.3e-10 68.2 80 48.8
BcaB02g10600 Brassica carinata HOM05D002091 ORTHO05D002140 4.3e-10 67.8 62 56.5
ClCG01G023210 Citrullus lanatus HOM05D002091 ORTHO05D002140 4.3e-10 67.8 44 72.7
Manes.17G048800 Manihot esculenta HOM05D002091 ORTHO05D002140 4.3e-10 67.8 38 76.3
CiPaw.10G052200 Carya illinoinensis HOM05D002091 ORTHO05D002140 5.6e-10 67.4 73 57.5
TAR624G0503 Trochodendron aralioides HOM05D002091 ORTHO05D002140 5.6e-10 67.4 66 51.5
BcaB03g12107 Brassica carinata HOM05D002091 ORTHO05D002140 7.4e-10 67.0 59 55.9
Duzib192G0619 Durio zibethinus HOM05D002091 ORTHO05D002140 7.4e-10 67.0 38 78.9
Aa31LG6G10340 Aethionema arabicum HOM05D002091 ORTHO05D002140 9.6e-10 66.6 38 76.3
A09p37650 Brassica napus HOM05D002091 ORTHO05D002140 9.6e-10 66.6 53 60.4
Carub.0004s1554 Capsella rubella HOM05D002091 ORTHO05D002140 9.6e-10 66.6 54 63.0
CsaV3_6G050360 Cucumis sativus L. HOM05D002091 ORTHO05D002140 9.6e-10 66.6 52 61.5
BraA09t39275Z Brassica rapa HOM05D002091 ORTHO05D002140 1.3e-09 66.2 53 60.4
Cpa.g.sc27.10 Carica papaya HOM05D002091 ORTHO05D002140 1.3e-09 66.2 38 76.3
Gohir.A10G027700 Gossypium hirsutum HOM05D002091 ORTHO05D002140 1.3e-09 66.2 75 49.3
Potri.011G057300 Populus trichocarpa HOM05D002091 ORTHO05D002140 1.3e-09 66.2 75 46.7
A08p25610 Brassica napus HOM05D002091 ORTHO05D002140 1.6e-09 65.9 54 63.0
BraA08t34511Z Brassica rapa HOM05D002091 ORTHO05D002140 1.6e-09 65.9 54 63.0
Sed0010495 Sechium edule HOM05D002091 ORTHO05D002140 1.6e-09 65.9 44 70.5
TAR624G0411 Trochodendron aralioides HOM05D002091 ORTHO05D002140 1.6e-09 65.9 66 50.0
AL1G42020 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
BcaC01g00046 Brassica carinata HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
C03p75100 Brassica napus HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
BolC3t19767H Brassica oleracea HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
Carub.0001s2687 Capsella rubella HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
Thhalv10009195m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
Thhalv10017477m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
Manes.16G031200 Manihot esculenta HOM05D002091 ORTHO05D002140 2.1e-09 65.5 38 76.3
Sp1g24670 Schrenkiella parvula HOM05D002091 ORTHO05D002140 2.1e-09 65.5 43 72.1
BcaC02g11464 Brassica carinata HOM05D002091 ORTHO05D002140 2.8e-09 65.1 42 73.8
CARHR027900 Cardamine hirsuta HOM05D002091 ORTHO05D002140 3.7e-09 64.7 43 72.1
AT1G28395 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 4.8e-09 64.3 43 69.8
EL10Ac8g20431 Beta vulgaris HOM05D002091 ORTHO05D002140 4.8e-09 64.3 47 70.2
BcaB07g32461 Brassica carinata HOM05D002091 ORTHO05D002140 4.8e-09 64.3 53 60.4
Gorai.011G029900 Gossypium raimondii HOM05D002091 ORTHO05D002140 4.8e-09 64.3 77 50.6
QL05p042066 Quercus lobata HOM05D002091 ORTHO05D002140 4.8e-09 64.3 43 72.1
MD05G1310800 Malus domestica HOM05D002091 ORTHO05D002140 6.2e-09 63.9 65 53.8
Nn3g18204 Nelumbo nucifera HOM05D002091 ORTHO05D002140 6.2e-09 63.9 55 54.5
Sp4g16250 Schrenkiella parvula HOM05D002091 ORTHO05D002140 6.2e-09 63.9 43 72.1
MELO3C032902.2 Cucumis melo HOM05D002091 ORTHO05D002140 8.1e-09 63.5 44 70.5
MD10G1289900 Malus domestica HOM05D002091 ORTHO05D002140 8.1e-09 63.5 43 67.4
Thecc.06G181700 Theobroma cacao HOM05D002091 ORTHO05D002140 8.1e-09 63.5 38 73.7
Gohir.D10G028100 Gossypium hirsutum HOM05D002091 ORTHO05D002140 1.1e-08 63.2 43 74.4
THA.LOC104814228 Tarenaya hassleriana HOM05D002091 ORTHO05D002140 1.1e-08 63.2 46 63.0
TAR626G1951 Trochodendron aralioides HOM05D002091 ORTHO05D002140 1.4e-08 62.8 66 47.0
Peaxi162Scf00845g00232 Petunia axillaris HOM05D002091 ORTHO05D002140 1.8e-08 62.4 37 78.4
Aa31LG9G13740 Aethionema arabicum HOM05D002091 ORTHO05D002140 3.1e-08 61.6 38 71.1
Eucgr.D00599 Eucalyptus grandis HOM05D002091 ORTHO05D002140 5.3e-08 60.8 43 67.4
C04p15160 Brassica napus HOM05D002091 ORTHO05D002140 6.9e-08 60.5 43 72.1
BolC4t23091H Brassica oleracea HOM05D002091 ORTHO05D002140 6.9e-08 60.5 43 72.1
arahy.Tifrunner.gnm1.ann1.G0WLQA Arachis hypogaea HOM05D002091 ORTHO05D002140 9.0e-08 60.1 53 60.4
Cc05_g07660 Coffea canephora HOM05D002091 ORTHO05D002140 9.0e-08 60.1 39 64.1
Eucgr.K01049 Eucalyptus grandis HOM05D002091 ORTHO05D002140 9.0e-08 60.1 36 69.4
Potri.004G048100 Populus trichocarpa HOM05D002091 ORTHO05D002140 9.0e-08 60.1 38 68.4
Aqoxy4G00667 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 1.2e-07 59.7 53 52.8
Lalb_Chr09g0327831 Lupinus albus HOM05D002091 ORTHO05D002140 1.2e-07 59.7 53 62.3
PSO541G0554 Papaver somniferum HOM05D002091 ORTHO05D002140 1.2e-07 59.7 43 65.1
Sc05g0007470 Simmondsia chinensis HOM05D002091 ORTHO05D002140 1.2e-07 59.7 54 61.1
Aqoxy1G02309 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 1.5e-07 59.3 46 63.0
AUR62014863 Chenopodium quinoa HOM05D002091 ORTHO05D002140 1.5e-07 59.3 46 63.0
AUR62031069 Chenopodium quinoa HOM05D002091 ORTHO05D002140 1.5e-07 59.3 46 63.0
Nn1g09648 Nelumbo nucifera HOM05D002091 ORTHO05D002140 1.5e-07 59.3 66 45.5
Aqoxy4G00647 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 2.0e-07 58.9 53 50.9
ECA234G0158 Erigeron canadensis HOM05D002091 ORTHO05D000004 2.0e-07 58.9 53 60.4
Hund23804 Selenicereus undatus HOM05D002091 ORTHO05D002140 2.0e-07 58.9 34 79.4
Solyc02g077730.3 Solanum lycopersicum HOM05D002091 ORTHO05D002140 2.0e-07 58.9 38 68.4
Sopen02g022620 Solanum pennellii HOM05D002091 ORTHO05D002140 2.0e-07 58.9 38 68.4
PGSC0003DMG400031762 Solanum tuberosum HOM05D002091 ORTHO05D002140 2.0e-07 58.9 38 68.4
TWI59G0683 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.0e-07 58.9 36 72.2
Oeu045604.1 Olea europaea HOM05D002091 ORTHO05D002140 2.6e-07 58.5 55 43.6
A05p11710 Brassica napus HOM05D002091 ORTHO05D002140 3.4e-07 58.2 63 54.0
BraA05t20116Z Brassica rapa HOM05D002091 ORTHO05D002140 3.4e-07 58.2 63 54.0
Lsat_1_v5_gn_4_51900 Lactuca sativa HOM05D002091 ORTHO05D002140 3.4e-07 58.2 53 54.7
arahy.Tifrunner.gnm1.ann1.252E8Q Arachis hypogaea HOM05D002091 ORTHO05D002140 4.5e-07 57.8 53 58.5
unitig_746.g26675 Utricularia gibba HOM05D002091 ORTHO05D002140 4.5e-07 57.8 53 54.7
HanXRQChr01g0027921 Helianthus annuus HOM05D002091 ORTHO05D002140 5.8e-07 57.4 66 42.4
Nn4g24122 Nelumbo nucifera HOM05D002091 ORTHO05D002140 5.8e-07 57.4 38 71.1
Nitab4.5_0008993g0040 Nicotiana tabacum HOM05D002091 ORTHO05D002140 7.6e-07 57.0 41 61.0
TWI23G0384 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 7.6e-07 57.0 36 72.2
Actinidia26140 Actinidia chinensis HOM05D002091 ORTHO05D002140 9.9e-07 56.6 70 47.1
Aqoxy4G00652 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 9.9e-07 56.6 53 49.1
EL10Ac9g20809 Beta vulgaris HOM05D002091 ORTHO05D002140 9.9e-07 56.6 44 54.5
Ca_00357_v3 Cicer arietinum L. HOM05D002091 ORTHO05D002140 9.9e-07 56.6 73 52.1
Ciclev10017238m.g Citrus clementina HOM05D002091 ORTHO05D002140 1.3e-06 56.2 38 71.1
Migut.B01464 Erythranthe guttata HOM05D002091 ORTHO05D002140 1.3e-06 56.2 57 45.6
Migut.M01112 Erythranthe guttata HOM05D002091 ORTHO05D002140 1.3e-06 56.2 68 44.1
HanXRQChr01g0003851 Helianthus annuus HOM05D002091 ORTHO05D002140 1.3e-06 56.2 41 63.4
HanXRQChr01g0014411 Helianthus annuus HOM05D002091 ORTHO05D002140 1.3e-06 56.2 40 65.0
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 1.3e-06 56.2 80 42.5
GSVIVG01021106001 Vitis vinifera HOM05D002091 ORTHO05D002140 1.3e-06 56.2 44 56.8
Peaxi162Scf00926g00514 Petunia axillaris HOM05D002091 ORTHO05D002140 1.7e-06 55.8 43 62.8
Sc21g0003160 Simmondsia chinensis HOM05D002091 ORTHO05D002140 1.7e-06 55.8 36 66.7
Sopen07g027640 Solanum pennellii HOM05D002091 ORTHO05D002140 1.7e-06 55.8 39 61.5
PGSC0003DMG400009394 Solanum tuberosum HOM05D002091 ORTHO05D002140 1.7e-06 55.8 39 61.5
Sc17g0005970 Simmondsia chinensis HOM05D002091 ORTHO05D002140 2.2e-06 55.5 43 65.1
COL.COLO4_18048 Corchorus olitorius HOM05D002091 ORTHO05D002140 2.9e-06 55.1 39 59.0
HanXRQChr17g0554581 Helianthus annuus HOM05D002091 ORTHO05D002140 2.9e-06 55.1 36 63.9
Medtr4g078770 Medicago truncatula HOM05D002091 ORTHO05D002140 2.9e-06 55.1 75 44.0
TWI56G0819 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.9e-06 55.1 38 68.4
TWI59G1280 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.9e-06 55.1 36 69.4
Cc02_g13760 Coffea canephora HOM05D002091 ORTHO05D002140 3.8e-06 54.7 45 64.4
CsaV3_5G038050 Cucumis sativus L. HOM05D002091 ORTHO05D002140 3.8e-06 54.7 39 59.0
HanXRQChr03g0093701 Helianthus annuus HOM05D002091 ORTHO05D002140 3.8e-06 54.7 41 61.0
Lj6g0006336 Lotus japonicus HOM05D002091 ORTHO05D002140 3.8e-06 54.7 73 46.6
Phvul.005G101000 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 3.8e-06 54.7 39 64.1
Prupe.3G134600 Prunus persica HOM05D002091 ORTHO05D002140 3.8e-06 54.7 38 68.4
Thecc.02G185200 Theobroma cacao HOM05D002091 ORTHO05D002140 3.8e-06 54.7 36 66.7
TWI59G0581 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 3.8e-06 54.7 35 74.3
EL10Ac9g20810 Beta vulgaris HOM05D002091 ORTHO05D002140 4.9e-06 54.3 55 43.6
CANSAT64G3013 Cannabis sativa HOM05D002091 ORTHO05D002140 4.9e-06 54.3 38 65.8
MELO3C021989.2 Cucumis melo HOM05D002091 ORTHO05D002140 4.9e-06 54.3 39 56.4
DCAR_004050 Daucus carota HOM05D002091 ORTHO05D002140 4.9e-06 54.3 72 43.1
Dinv17349 Davidia involucrata HOM05D002091 ORTHO05D002140 4.9e-06 54.3 52 55.8
QL08p040000 Quercus lobata HOM05D002091 ORTHO05D002140 4.9e-06 54.3 39 61.5
BolC5t31453H Brassica oleracea HOM05D002091 ORTHO05D002140 6.4e-06 53.9 53 52.8
Ca_01484_v3 Cicer arietinum L. HOM05D002091 ORTHO05D002140 6.4e-06 53.9 39 61.5
Duzib052G0085 Durio zibethinus HOM05D002091 ORTHO05D002140 6.4e-06 53.9 57 47.4
Glyma.13G294600 Glycine max HOM05D002091 ORTHO05D002140 6.4e-06 53.9 39 61.5
Nitab4.5_0003076g0020 Nicotiana tabacum HOM05D002091 ORTHO05D002140 6.4e-06 53.9 39 59.0
TWI59G1014 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 6.4e-06 53.9 36 66.7
vmacro15927 Vaccinium macrocarpon HOM05D002091 ORTHO05D002140 6.4e-06 53.9 40 60.0
GSVIVG01020598001 Vitis vinifera HOM05D002091 ORTHO05D002140 6.4e-06 53.9 77 42.9
Cc05_g07650 Coffea canephora HOM05D002091 ORTHO05D002140 8.4e-06 53.5 69 42.0
FAN16G2242 Fragaria x ananassa HOM05D002091 ORTHO05D002140 8.4e-06 53.5 38 65.8
TWI59G1354 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 8.4e-06 53.5 35 71.4


User provided reference genes

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