Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.3e-81 307.0 250 100.0
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 8.1e-79 297.7 250 97.6
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 1.9e-75 286.6 250 95.6
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.4e-75 285.0 250 95.2
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 7.1e-75 284.6 251 95.6
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 7.6e-69 264.6 251 88.8
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.1e-51 207.6 198 94.4
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 1.3e-49 200.7 235 81.3
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 2.9e-36 156.4 238 71.8
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 5.0e-36 155.6 242 71.5
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 1.9e-35 153.7 236 71.2
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 7.2e-35 151.8 239 68.6
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.6e-34 150.6 236 69.5
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.6e-34 150.6 238 69.7
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 2.7e-34 149.8 236 69.1
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.0e-33 147.9 239 67.8
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.4e-33 147.5 234 69.7
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 2.3e-33 146.7 233 68.2
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 8.8e-33 144.8 248 67.7
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 8.8e-33 144.8 229 69.9
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 4.4e-32 142.5 256 66.0
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.7e-31 140.6 237 68.4
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.7e-31 140.6 234 68.4
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 2.2e-31 140.2 235 66.0
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 1.1e-30 137.9 234 67.5
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 1.4e-30 137.5 232 70.3
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.8e-30 137.1 238 68.5
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.6e-29 134.0 239 65.7
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 2.0e-29 133.7 233 66.5
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 2.6e-29 133.3 253 64.0
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 5.9e-29 132.1 248 64.9
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 7.7e-29 131.7 237 53.6
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 1.7e-28 130.6 244 64.3
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 1.7e-28 130.6 244 64.3
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.7e-28 130.6 238 66.8
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 1.7e-28 130.6 255 63.1
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 2.9e-28 129.8 248 65.3
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 5.0e-28 129.0 255 63.5
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 5.0e-28 129.0 238 65.5
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 8.5e-28 128.3 234 64.1
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.1e-27 127.9 244 63.5
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.1e-27 127.9 244 63.5
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 1.5e-27 127.5 239 65.7
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.5e-27 127.5 237 63.7
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.9e-27 127.1 237 63.7
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 2.5e-27 126.7 245 61.6
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 4.2e-27 125.9 236 64.8
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 5.5e-27 125.6 254 63.0
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 7.2e-27 125.2 235 66.0
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 9.4e-27 124.8 235 65.1
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 9.4e-27 124.8 234 65.8
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 1.2e-26 124.4 242 64.0
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.2e-26 124.4 257 60.3
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 6.1e-26 122.1 233 64.8
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 8.0e-26 121.7 239 52.3
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.0e-25 121.3 261 59.4
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.4e-25 120.9 233 63.5
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 2.3e-25 120.2 206 69.4
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.3e-25 120.2 240 63.8
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 3.0e-25 119.8 232 64.7
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.2e-25 119.0 233 63.1
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 8.8e-25 118.2 233 65.2
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 1.2e-24 117.9 80 71.2
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 1.2e-24 117.9 233 63.9
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 1.5e-24 117.5 80 71.2
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 2.0e-24 117.1 253 61.7
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 2.0e-24 117.1 287 56.1
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 2.6e-24 116.7 235 62.6
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 2.6e-24 116.7 239 63.2
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 3.3e-24 116.3 243 61.7
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 4.4e-24 115.9 241 62.7
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 7.5e-24 115.2 272 56.6
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 1.3e-23 114.4 231 64.1
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 2.8e-23 113.2 163 82.8
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 3.7e-23 112.8 67 80.6
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 6.3e-23 112.1 248 60.5
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 6.3e-23 112.1 248 60.5
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 6.3e-23 112.1 171 77.8
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 8.2e-23 111.7 252 62.7
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 1.1e-22 111.3 250 60.8
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 1.1e-22 111.3 67 77.6
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 2.4e-22 110.2 237 58.6
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 2.4e-22 110.2 234 63.7
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 3.1e-22 109.8 235 63.8
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 5.3e-22 109.0 225 64.9
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.0e-21 107.1 68 73.5
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 2.7e-21 106.7 191 68.6
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 2.7e-21 106.7 188 73.4
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.0e-20 104.8 181 56.4
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 8.5e-20 101.7 201 69.2
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 1.5e-19 100.9 226 61.1
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 2.5e-19 100.1 232 58.2
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 9.4e-19 98.2 231 62.3
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 1.6e-18 97.4 202 68.8
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 6.1e-18 95.5 234 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 2.3e-17 93.6 68 63.2
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 2.3e-17 93.6 58 72.4
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 8.8e-17 91.7 68 69.1
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 1.5e-16 90.9 68 61.8
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 7.5e-16 88.6 68 67.6
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 9.8e-16 88.2 280 53.2
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 1.4e-14 84.3 242 55.8
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 1.2e-13 81.3 203 65.0
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 1.6e-13 80.9 267 53.9
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.0e-12 78.2 203 32.5
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 3.8e-12 76.3 49 73.5
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.5e-11 74.3 211 60.2
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 3.2e-11 73.2 250 56.4
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 4.2e-11 72.8 51 58.8
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 9.5e-11 71.6 198 49.5
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.1e-10 70.5 195 65.1
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 4.7e-10 69.3 183 45.4
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 3.0e-09 66.6 45 66.7
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 5.7e-08 62.4 102 47.1
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 6.3e-07 58.9 193 58.5
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 8.3e-07 58.5 34 70.6
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 7.0e-06 55.5 36 69.4


User provided reference genes

Program Settings