Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.7e-289 997.7 558 100.0
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 5.1e-283 977.2 558 98.6
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 8.5e-262 906.7 559 91.8
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 9.4e-261 903.3 560 93.6
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.0e-260 900.2 560 93.2
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 8.6e-222 773.9 572 76.0
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 1.5e-221 773.1 563 81.3
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.2e-220 770.0 524 79.8
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 1.8e-219 766.1 562 81.5
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.7e-217 759.6 541 74.7
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 2.4e-216 755.7 563 76.4
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 7.1e-216 754.2 538 74.0
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 5.1e-214 748.0 553 75.2
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 7.3e-213 744.2 531 77.2
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.6e-212 743.0 556 74.1
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 2.1e-212 742.7 525 77.5
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 4.7e-212 741.5 529 76.2
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 6.2e-212 741.1 524 74.8
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.4e-211 740.0 554 73.8
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.5e-210 736.5 530 77.5
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 2.6e-210 735.7 533 75.4
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 5.8e-210 734.6 528 79.5
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.8e-209 731.9 567 71.4
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 8.4e-209 730.7 508 74.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 8.4e-209 730.7 524 77.7
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 7.1e-208 727.6 489 77.3
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 1.2e-207 726.9 527 77.2
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.2e-207 726.9 487 76.6
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.6e-207 726.5 458 80.1
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.1e-207 726.1 470 78.9
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 2.1e-207 726.1 501 77.2
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 2.1e-207 726.1 495 76.6
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.0e-206 723.8 524 72.1
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.3e-206 723.4 535 78.7
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.3e-206 723.4 491 78.2
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.5e-205 719.9 530 75.5
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.9e-205 719.5 493 76.1
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 2.5e-205 719.2 531 76.3
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 4.3e-205 718.4 440 81.4
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 9.6e-205 717.2 539 71.1
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 6.2e-204 714.5 477 75.1
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 6.2e-204 714.5 459 78.9
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.1e-203 713.8 488 75.6
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 1.1e-203 713.8 529 77.1
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.7e-201 706.4 528 74.2
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 2.2e-201 706.1 456 79.2
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 4.9e-201 704.9 498 74.5
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.1e-200 703.7 489 76.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.4e-200 703.4 539 72.2
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 4.2e-200 701.8 490 75.7
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 5.4e-200 701.4 492 75.0
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 9.3e-200 700.7 528 74.4
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 9.3e-200 700.7 529 73.2
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 2.1e-199 699.5 494 76.5
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 2.1e-199 699.5 523 75.0
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.7e-199 699.1 460 77.6
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 3.5e-199 698.7 442 80.1
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 7.8e-199 697.6 490 74.5
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 8.7e-198 694.1 530 76.2
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 2.5e-197 692.6 526 72.2
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 9.6e-197 690.6 509 73.5
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 2.1e-196 689.5 525 72.8
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 1.5e-194 683.3 440 78.6
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 2.0e-194 682.9 439 78.1
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 2.6e-194 682.6 457 75.9
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 3.4e-194 682.2 564 65.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 2.9e-193 679.1 465 75.5
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 4.9e-193 678.3 524 70.2
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 2.1e-191 672.9 523 73.2
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.7e-191 672.5 523 74.4
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 4.6e-191 671.8 419 78.8
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 4.6e-191 671.8 419 78.8
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 4.6e-191 671.8 430 79.3
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 7.9e-191 671.0 579 68.9
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.3e-190 670.2 523 73.8
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.8e-190 669.8 460 73.9
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.3e-190 669.5 523 71.3
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 5.1e-190 668.3 523 73.2
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 6.7e-190 667.9 455 74.9
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.9e-189 666.4 489 73.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-189 666.4 499 71.1
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 2.5e-189 666.0 419 77.8
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.3e-189 665.6 523 73.0
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 4.3e-189 665.2 535 66.0
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 4.3e-189 665.2 523 70.0
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 2.1e-188 662.9 530 70.0
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 1.1e-187 660.6 419 77.3
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 3.1e-187 659.1 523 71.3
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 4.0e-187 658.7 492 70.3
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 5.3e-187 658.3 419 77.1
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 5.8e-186 654.8 523 72.7
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 7.1e-184 647.9 523 68.6
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 7.1e-184 647.9 457 73.3
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.1e-183 646.4 488 69.5
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 3.3e-181 639.0 420 77.4
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.1e-176 624.0 547 69.1
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 6.1e-175 618.2 489 65.6
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.9e-174 615.5 523 67.7
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 3.7e-172 609.0 496 66.1
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.9e-171 604.7 523 68.5
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 6.9e-171 604.7 525 66.3
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 3.9e-166 589.0 490 65.7
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 5.1e-166 588.6 489 63.2
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 8.8e-166 587.8 527 66.4
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.5e-165 586.3 510 63.3
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.7e-164 583.6 356 81.5
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 5.9e-162 575.1 503 61.4
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 2.9e-161 572.8 422 73.2
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.4e-160 570.5 396 74.7
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 3.6e-159 565.8 481 62.2
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 7.9e-159 564.7 481 61.7
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 3.0e-158 562.8 472 64.2
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 8.8e-158 561.2 512 61.3
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 9.7e-157 557.8 398 72.9
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 2.8e-156 556.2 516 60.9
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 6.3e-156 555.1 426 68.8
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 1.4e-155 553.9 519 68.2
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-154 548.9 486 61.7
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.6e-149 533.1 425 65.9
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 6.3e-148 528.5 455 61.8
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.6e-146 523.1 496 58.1
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 3.6e-143 512.7 427 62.5
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.6e-138 497.3 498 54.4
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.3e-132 477.6 396 63.9
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 1.0e-129 468.0 434 58.8
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 1.3e-129 467.6 438 55.5
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 4.0e-126 456.1 712 44.9
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.5e-125 454.1 396 58.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 2.6e-125 453.4 391 60.9
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-124 451.1 498 54.6
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 4.9e-124 449.1 493 53.3
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 8.3e-124 448.4 460 55.2
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 3.5e-122 443.0 435 53.3
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 4.7e-119 432.6 491 53.2
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.2e-111 407.9 496 50.2
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 3.6e-111 406.4 403 52.9
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 6.2e-111 405.6 496 51.0
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 3.2e-107 393.3 442 52.5
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 7.1e-107 392.1 509 47.5
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 2.7e-106 390.2 341 59.2
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.2e-98 364.8 381 60.1
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 5.1e-97 359.4 504 45.2
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 6.8e-94 349.0 280 65.7
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.7e-90 337.0 300 58.0
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.3e-87 328.2 251 70.9
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 7.6e-85 318.9 373 45.6
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 6.4e-84 315.8 493 41.6
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 2.1e-79 300.8 263 63.9
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.6e-74 284.6 265 66.0
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.0e-73 282.0 330 47.3
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 6.5e-68 262.7 349 47.6
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 3.2e-67 260.4 174 73.6
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.8e-49 201.4 281 47.7
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.7e-39 168.3 98 78.6
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 3.6e-34 150.6 256 41.0
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.3e-31 142.1 102 67.6
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.2e-24 119.0 144 47.2
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.5e-24 118.6 106 58.5
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 8.3e-23 112.8 121 57.0
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.8e-22 111.7 93 68.8
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 3.1e-22 110.9 220 40.5
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 3.5e-21 107.5 122 48.4
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 2.9e-20 104.4 235 34.0
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.8e-20 104.0 70 67.1
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 8.5e-20 102.8 154 44.2
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 9.4e-19 99.4 115 51.3
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.4e-17 95.5 45 95.6
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.2e-16 92.4 74 60.8
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 4.4e-16 90.5 115 49.6
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.0e-13 81.6 75 48.0
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 2.7e-13 81.3 124 39.5
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.0e-12 79.3 109 48.6
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 3.8e-12 77.4 46 82.6
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 3.8e-12 77.4 101 43.6
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 5.6e-11 73.6 96 43.8
FAN13G0915 Fragaria x ananassa HOM05D003858 ORTHO05D204259 2.3e-09 68.2 103 45.6
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 6.8e-09 66.6 51 62.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.2e-08 65.9 199 25.1
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 9.8e-08 62.8 29 96.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-07 62.4 210 24.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.8e-06 58.5 199 23.6


User provided reference genes

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