Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 1.6e-55 219.2 107 100.0
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 2.4e-43 178.7 93 96.8
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 2.4e-43 178.7 93 96.8
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 1.5e-37 159.5 93 88.2
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 3.0e-22 108.6 99 64.6
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 5.6e-21 104.4 98 62.2
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 1.2e-18 96.7 97 58.8
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 2.6e-18 95.5 95 57.9
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 4.5e-18 94.7 99 53.5
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 9.9e-18 93.6 100 53.0
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 2.9e-17 92.0 88 63.6
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 4.9e-17 91.3 88 55.7
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 4.9e-17 91.3 88 55.7
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 8.4e-17 90.5 91 52.7
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 1.1e-16 90.1 102 57.8
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 3.2e-16 88.6 98 54.1
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 4.2e-16 88.2 88 54.5
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 2.7e-15 85.5 95 54.7
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 6.0e-15 84.3 92 48.9
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.3e-14 83.2 92 51.1
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.3e-14 83.2 97 53.6
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 1.3e-14 83.2 78 59.0
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 2.3e-14 82.4 94 52.1
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 2.3e-14 82.4 101 52.5
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 3.0e-14 82.0 93 49.5
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 5.1e-14 81.3 93 49.5
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 8.7e-14 80.5 95 55.8
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 8.7e-14 80.5 94 47.9
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.9e-13 79.3 90 54.4
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 2.5e-13 79.0 86 57.0
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 4.3e-13 78.2 92 52.2
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 4.3e-13 78.2 92 52.2
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 4.3e-13 78.2 86 54.7
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 4.3e-13 78.2 86 54.7
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 7.4e-13 77.4 91 48.4
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.1e-12 75.9 85 54.1
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 2.1e-12 75.9 85 54.1
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.8e-12 75.5 85 54.1
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.8e-12 74.7 90 51.1
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 6.2e-12 74.3 84 50.0
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 1.1e-11 73.6 97 48.5
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 1.4e-11 73.2 95 51.6
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 3.1e-11 72.0 97 48.5
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 4.0e-11 71.6 93 51.6
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 4.0e-11 71.6 85 56.5
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 5.3e-11 71.2 90 48.9
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 6.9e-11 70.9 97 44.3
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 9.0e-11 70.5 85 51.8
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 9.0e-11 70.5 85 47.1
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 1.5e-10 69.7 102 47.1
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 5.8e-10 67.8 85 48.2
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.6e-10 67.4 84 51.2
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 7.6e-10 67.4 94 43.6
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 1.0e-09 67.0 86 48.8
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 1.0e-09 67.0 84 50.0
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 1.0e-09 67.0 98 41.8
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 2.2e-09 65.9 93 47.3
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 6.5e-09 64.3 83 45.8
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 8.4e-09 63.9 94 40.4
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.4e-08 63.2 81 50.6
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 1.9e-08 62.8 85 45.9
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 2.5e-08 62.4 92 46.7
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 2.5e-08 62.4 88 40.9
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 3.2e-08 62.0 84 45.2
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 4.2e-08 61.6 84 47.6
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 4.2e-08 61.6 77 49.4
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 4.2e-08 61.6 88 46.6
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 5.5e-08 61.2 106 42.5
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 5.5e-08 61.2 85 43.5
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 7.1e-08 60.8 87 41.4
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 7.1e-08 60.8 93 41.9
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.2e-07 60.1 86 44.2
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.2e-07 60.1 104 39.4
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 1.2e-07 60.1 32 81.2
Hma1.2p1_0075F.1_g039350 Hydrangea macrophylla HOM05D007691 ORTHO05D008758 2.1e-07 59.3 83 39.8
HanXRQChr05g0155941 Helianthus annuus HOM05D007106 ORTHO05D007770 3.5e-07 58.5 89 43.8
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 3.5e-07 58.5 93 44.1
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 4.6e-07 58.2 89 44.9
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 4.6e-07 58.2 89 41.6
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 7.9e-07 57.4 88 44.3
DCAR_020650 Daucus carota HOM05D007691 ORTHO05D008758 1.0e-06 57.0 99 36.4
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 1.0e-06 57.0 85 44.7
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 2.3e-06 55.8 79 40.5
Haze_07318 Corylus avellana HOM05D007106 ORTHO05D007770 3.9e-06 55.1 53 58.5
Dinv25036 Davidia involucrata HOM05D007691 ORTHO05D008758 3.9e-06 55.1 82 45.1
MBI19_g09311_MAGBIO Magnolia biondii HOM05D007691 ORTHO05D008758 3.9e-06 55.1 82 42.7
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 3.9e-06 55.1 82 41.5
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 3.9e-06 55.1 86 41.9
Migut.I00186 Erythranthe guttata HOM05D007106 ORTHO05D007770 5.1e-06 54.7 40 60.0
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 5.1e-06 54.7 80 42.5
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 6.7e-06 54.3 106 34.9
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 6.7e-06 54.3 82 42.7
Sed0006259 Sechium edule HOM05D007691 ORTHO05D008758 6.7e-06 54.3 86 39.5
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 6.7e-06 54.3 81 46.9


User provided reference genes

Program Settings