Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.3e-134 483.0 240 100.0
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 2.6e-106 389.0 236 84.7
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 7.7e-103 377.5 255 78.4
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.5e-93 346.7 236 77.1
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.8e-91 339.7 223 79.4
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.8e-91 339.7 223 79.4
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 3.9e-78 295.4 238 66.0
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 3.3e-77 292.4 226 67.7
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 9.5e-77 290.8 239 62.3
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 6.2e-76 288.1 246 63.8
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.7e-73 280.0 240 65.4
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 1.1e-72 277.3 240 61.2
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 3.2e-72 275.8 241 61.8
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 1.7e-70 270.0 239 61.1
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 4.3e-69 265.4 179 70.4
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 1.8e-67 260.0 235 59.6
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 6.8e-67 258.1 218 59.6
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.2e-66 257.3 242 59.1
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.3e-65 253.8 238 57.1
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 2.2e-65 253.1 243 56.0
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 4.9e-65 251.9 226 58.4
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 1.9e-64 250.0 247 57.5
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 1.9e-64 250.0 198 64.1
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 3.5e-63 245.7 239 57.3
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 7.8e-63 244.6 230 60.0
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 7.8e-63 244.6 230 60.0
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.0e-62 244.2 216 59.7
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 1.3e-62 243.8 234 56.4
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 2.3e-62 243.0 237 58.2
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 6.6e-62 241.5 239 55.2
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 6.6e-62 241.5 234 55.6
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 3.3e-61 239.2 221 59.3
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 3.3e-61 239.2 241 56.8
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 4.3e-61 238.8 238 57.1
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 4.3e-61 238.8 224 57.6
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.2e-60 237.3 245 55.1
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 2.8e-60 236.1 198 60.6
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 2.8e-60 236.1 200 65.0
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 6.2e-60 235.0 238 55.0
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 2.4e-59 233.0 197 60.4
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 2.4e-59 233.0 206 59.7
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 3.1e-59 232.6 210 58.6
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 5.2e-59 231.9 236 56.8
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 6.9e-59 231.5 239 51.9
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 8.9e-59 231.1 208 58.2
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 8.9e-59 231.1 240 54.2
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 1.2e-58 230.7 240 53.3
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.2e-58 230.7 231 55.0
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.5e-58 230.3 186 62.9
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 2.0e-58 229.9 188 61.7
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.6e-58 229.6 231 56.3
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 9.9e-58 227.6 239 54.8
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 1.3e-57 227.3 241 54.4
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 1.3e-57 227.3 221 55.7
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.2e-57 226.5 236 52.5
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 2.9e-57 226.1 198 61.1
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 3.8e-57 225.7 195 61.5
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 4.9e-57 225.3 191 61.3
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 4.9e-57 225.3 226 53.5
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 6.4e-57 224.9 224 57.1
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 1.1e-56 224.2 223 55.2
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 3.2e-56 222.6 176 64.8
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 4.2e-56 222.2 181 64.1
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 7.1e-56 221.5 214 58.9
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 7.1e-56 221.5 192 62.5
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 7.1e-56 221.5 235 52.8
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 9.3e-56 221.1 213 54.5
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.5e-55 219.2 187 57.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 4.6e-55 218.8 235 51.9
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.3e-54 217.2 236 51.7
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.7e-54 216.9 224 54.9
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 2.3e-54 216.5 189 57.7
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 3.0e-54 216.1 229 53.7
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 3.9e-54 215.7 239 55.2
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 8.7e-54 214.5 231 49.8
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 8.7e-54 214.5 191 59.2
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.5e-53 213.8 198 57.6
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 4.3e-53 212.2 185 59.5
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.3e-52 210.7 247 49.4
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.6e-52 210.3 195 59.5
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 1.4e-51 207.2 215 54.0
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.8e-51 206.8 214 51.9
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.8e-51 206.8 214 51.9
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 4.0e-51 205.7 203 54.2
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.2e-50 204.1 181 61.3
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.5e-50 203.8 214 50.5
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 1.5e-50 203.8 189 55.6
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 2.6e-50 203.0 237 50.6
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 9.9e-50 201.1 201 54.2
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.3e-49 200.7 246 48.4
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 1.7e-49 200.3 170 61.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.2e-49 199.9 219 52.1
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 3.8e-49 199.1 155 65.2
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.1e-48 197.6 203 52.7
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.4e-48 197.2 178 57.9
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.6e-47 193.7 203 51.2
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 3.5e-47 192.6 125 72.8
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 3.3e-45 186.0 196 54.1
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.8e-43 180.3 226 50.0
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 4.0e-43 179.1 137 65.0
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.4e-42 176.0 209 47.8
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.4e-40 170.6 156 53.8
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.2e-40 169.5 155 60.0
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.2e-40 169.5 155 60.0
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.3e-38 163.3 148 62.2
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 5.6e-37 158.7 156 53.2
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.6e-36 157.1 134 59.0
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.6e-36 157.1 223 44.4
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 8.2e-36 154.8 167 47.3
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.2e-34 151.0 94 78.7
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.2e-34 151.0 141 59.6
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 4.5e-34 149.1 138 58.0
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 5.5e-32 142.1 90 67.8
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 9.3e-32 141.4 135 52.6
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 3.9e-30 136.0 83 79.5
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 1.9e-29 133.7 186 43.0
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 3.4e-26 122.9 140 50.7
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 1.9e-24 117.1 94 56.4
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 5.5e-24 115.5 113 47.8
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.9e-21 107.1 91 49.5
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 3.1e-19 99.8 106 55.7
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.2e-15 87.8 87 42.5
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 9.4e-08 61.6 178 25.3


User provided reference genes

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