Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.4e-201 705.3 363 100.0
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 4.0e-196 688.0 363 98.1
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.0e-194 683.3 363 97.5
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.1e-190 669.8 363 95.3
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.1e-182 643.3 372 91.7
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 4.2e-169 598.2 343 88.0
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 6.1e-144 514.6 362 72.9
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 4.0e-135 485.3 362 68.0
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 3.9e-114 415.6 326 64.4
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 2.2e-109 399.8 369 60.2
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 3.2e-108 396.0 311 64.6
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 9.2e-108 394.4 321 62.9
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 1.2e-107 394.0 348 61.5
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 2.7e-107 392.9 365 59.5
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 9.9e-102 374.4 364 57.7
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 1.9e-100 370.2 364 53.8
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 9.3e-100 367.9 350 56.9
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 1.2e-99 367.5 359 56.3
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.6e-99 367.1 368 54.9
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 4.6e-99 365.5 363 54.8
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.3e-98 363.2 331 58.0
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 6.6e-98 361.7 331 57.7
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 6.6e-98 361.7 356 55.9
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 1.5e-97 360.5 362 53.9
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 5.6e-97 358.6 370 53.2
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 7.3e-97 358.2 368 54.1
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.1e-96 356.7 331 56.8
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 6.2e-96 355.1 358 59.2
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 9.3e-92 341.3 365 54.5
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 2.1e-91 340.1 347 54.8
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 1.0e-90 337.8 361 50.4
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 1.3e-90 337.4 362 51.9
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 5.1e-90 335.5 346 52.9
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 1.1e-89 334.3 359 51.5
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 3.7e-88 329.3 346 52.9
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 6.2e-88 328.6 361 51.5
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 2.4e-87 326.6 339 54.0
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 3.1e-87 326.2 370 51.1
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 5.8e-86 322.0 348 53.4
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 1.7e-85 320.5 368 51.4
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 4.2e-84 315.8 347 50.7
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 9.3e-84 314.7 380 50.3
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 2.7e-83 313.2 368 48.6
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 3.0e-82 309.7 383 49.3
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 6.7e-82 308.5 367 50.4
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 3.3e-81 306.2 359 47.6
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 3.3e-81 306.2 359 47.9
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 3.4e-78 296.2 359 46.5
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 4.5e-78 295.8 270 57.8
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 7.1e-76 288.5 273 57.5
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 1.2e-75 287.7 350 48.6
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 2.1e-75 287.0 318 51.6
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 1.0e-74 284.6 362 46.7
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 3.0e-74 283.1 341 49.6
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 7.4e-73 278.5 365 44.9
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 2.2e-72 276.9 352 47.2
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 2.8e-72 276.6 360 44.2
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 1.1e-71 274.6 321 49.2
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 1.8e-71 273.9 349 46.4
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 4.1e-71 272.7 316 48.4
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 9.0e-71 271.6 271 59.0
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 1.2e-70 271.2 272 59.2
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.3e-69 267.7 332 47.9
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 1.7e-69 267.3 355 43.9
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 5.0e-69 265.8 309 51.1
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 1.1e-68 264.6 348 47.4
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 3.6e-67 259.6 309 49.2
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 6.1e-67 258.8 350 47.1
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.5e-65 254.2 327 46.8
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 2.5e-65 253.4 329 45.3
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 1.7e-64 250.8 324 44.4
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 6.3e-64 248.8 365 43.6
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 4.5e-62 242.7 302 48.7
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 1.3e-61 241.1 344 44.5
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 1.3e-61 241.1 344 44.5
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 1.9e-60 237.3 283 50.2
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 8.8e-58 228.4 364 43.1
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 2.6e-57 226.9 204 60.8
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 4.4e-57 226.1 254 50.0
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 5.0e-53 212.6 225 50.2
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 5.5e-52 209.1 212 55.7
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 7.2e-52 208.8 269 43.5
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 2.2e-48 197.2 368 35.9
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 8.2e-48 195.3 361 37.4
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 1.3e-45 188.0 296 41.6
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 2.9e-45 186.8 366 33.3
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 2.7e-43 180.3 353 34.8
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 6.1e-43 179.1 367 34.6
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 1.4e-42 177.9 343 35.6
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 8.8e-42 175.3 171 57.3
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 4.4e-41 172.9 349 34.4
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.8e-40 170.2 354 35.0
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 1.1e-39 168.3 354 34.7
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 1.8e-39 167.5 349 33.8
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 1.8e-39 167.5 354 33.9
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 1.8e-39 167.5 354 33.9
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 2.4e-39 167.2 353 33.4
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 7.0e-39 165.6 353 33.4
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 7.0e-39 165.6 349 33.2
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 3.5e-38 163.3 350 32.0
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 2.9e-37 160.2 138 58.7
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 2.3e-34 150.6 237 41.8
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 3.4e-33 146.7 289 35.3
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 3.8e-29 133.3 320 30.3
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 5.5e-28 129.4 294 31.3
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 3.6e-27 126.7 130 50.8
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 1.3e-24 118.2 347 29.1
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 1.6e-22 111.3 290 30.3
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 2.7e-22 110.5 333 29.7
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.0e-21 108.6 340 27.9
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 3.9e-21 106.7 295 30.2
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 4.7e-19 99.8 280 31.1
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 7.5e-17 92.4 117 46.2
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 7.5e-17 92.4 117 46.2
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 3.0e-13 80.5 80 52.5
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 1.6e-11 74.7 65 56.9
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.1e-11 74.3 129 38.0


User provided reference genes

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