Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.7e-107 391.7 225 100.0
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.4e-106 389.8 225 99.6
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.1e-106 387.1 225 99.1
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.1e-103 380.2 225 97.3
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 7.3e-95 350.9 225 92.4
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.2e-94 350.1 225 91.6
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.0e-93 347.1 225 91.1
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 5.2e-93 344.7 225 91.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 6.8e-93 344.4 225 91.6
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 6.8e-93 344.4 225 90.2
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 2.0e-92 342.8 225 91.1
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 2.0e-92 342.8 225 90.7
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.6e-92 342.4 225 90.2
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.6e-92 342.4 225 89.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 4.4e-92 341.7 225 90.2
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.4e-92 341.7 225 89.8
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 5.8e-92 341.3 225 89.8
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 7.5e-92 340.9 225 89.8
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.8e-92 340.5 225 89.3
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.3e-91 340.1 225 90.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.7e-91 339.7 225 89.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.7e-91 339.7 225 89.8
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 2.2e-91 339.3 225 89.8
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.9e-91 339.0 225 88.4
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 3.7e-91 338.6 225 89.8
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 4.9e-91 338.2 238 86.1
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 4.9e-91 338.2 225 88.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 6.4e-91 337.8 225 89.3
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 6.4e-91 337.8 224 88.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 1.1e-90 337.0 225 89.3
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.1e-90 337.0 225 88.0
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.4e-90 336.7 225 88.9
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.9e-90 336.3 225 89.3
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.9e-90 336.3 225 89.3
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.4e-90 335.9 231 87.4
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.4e-90 335.9 225 88.4
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 5.4e-90 334.7 225 88.0
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 9.2e-90 334.0 225 88.4
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.7e-89 332.4 224 88.4
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-89 331.6 226 88.1
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.6e-89 331.6 226 88.1
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.0e-89 331.3 226 88.1
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 7.8e-89 330.9 225 88.0
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.3e-88 330.1 228 86.8
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.3e-88 330.1 224 88.4
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 3.0e-88 328.9 225 88.0
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 5.0e-88 328.2 230 86.1
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 6.6e-88 327.8 225 85.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 6.6e-88 327.8 225 85.8
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 8.6e-88 327.4 225 87.1
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 8.6e-88 327.4 223 86.5
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.9e-87 326.2 225 85.8
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.9e-87 326.2 229 85.6
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.9e-87 326.2 225 87.6
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 5.6e-87 324.7 225 85.3
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 5.6e-87 324.7 225 85.3
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 5.6e-87 324.7 232 84.5
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 7.3e-87 324.3 225 85.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 9.5e-87 323.9 227 85.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.6e-86 323.2 225 84.9
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.6e-86 323.2 225 84.9
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.1e-86 322.8 232 85.3
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 3.6e-86 322.0 231 84.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 4.7e-86 321.6 225 84.9
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 4.7e-86 321.6 225 84.9
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 4.7e-86 321.6 225 84.9
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 6.2e-86 321.2 226 85.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 6.2e-86 321.2 231 84.4
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 6.2e-86 321.2 231 84.4
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.2e-86 321.2 232 84.9
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 6.2e-86 321.2 231 84.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 6.2e-86 321.2 231 84.8
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 6.2e-86 321.2 225 84.9
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 8.1e-86 320.9 225 84.4
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 8.1e-86 320.9 225 84.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.1e-86 320.9 231 84.0
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.1e-85 320.5 229 83.8
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.1e-85 320.5 231 83.1
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.1e-85 320.5 233 83.3
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.5
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.4e-85 320.1 225 84.4
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.4e-85 320.1 232 84.5
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.4e-85 320.1 232 84.5
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.8e-85 319.7 225 84.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.8e-85 319.7 225 84.4
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.8e-85 319.7 231 84.0
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.1e-85 318.9 225 84.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.1e-85 318.9 225 84.4
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 4.0e-85 318.5 225 84.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.0e-85 318.5 225 84.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 4.0e-85 318.5 230 85.2
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 4.0e-85 318.5 232 84.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 4.0e-85 318.5 232 84.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.0e-85 318.5 232 84.5
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.0e-85 318.5 221 86.0
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.2e-85 318.2 232 84.1
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 5.2e-85 318.2 224 85.3
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 8.9e-85 317.4 232 84.1
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.5e-84 316.6 225 84.0
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.5e-84 316.6 225 85.3
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 225 85.3
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 5.8e-84 314.7 231 83.1
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 9.8e-84 313.9 227 83.3
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 9.8e-84 313.9 231 82.7
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.3e-83 313.5 228 83.3
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.3e-83 313.5 231 82.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.7e-83 313.2 225 82.7
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 3.7e-83 312.0 227 82.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-82 310.1 225 82.7
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.4e-82 309.3 227 83.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.2e-82 308.9 202 88.1
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 3.2e-82 308.9 229 82.5
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.1e-82 308.5 226 83.2
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.1e-82 308.5 226 83.2
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 2.7e-81 305.8 230 79.1
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 1.0e-80 303.9 205 86.3
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.3e-80 303.5 228 82.0
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.3e-80 303.5 228 81.6
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 2.3e-80 302.8 189 92.6
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.3e-80 302.8 202 88.6
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 3.0e-80 302.4 269 71.7
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.5e-79 300.1 198 88.9
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.5e-79 300.1 215 84.2
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.9e-79 299.7 228 82.0
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 3.3e-79 298.9 198 87.9
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 3.3e-79 298.9 231 81.0
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 7.3e-79 297.7 189 91.5
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 2.1e-78 296.2 180 95.0
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 3.6e-78 295.4 179 95.5
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.5e-76 290.0 283 59.7
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.2e-75 286.2 168 99.4
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 3.2e-74 282.3 199 85.4
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.2e-73 280.4 185 89.2
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.7e-72 276.6 193 87.6
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.4e-69 266.9 178 88.8
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.4e-69 266.9 187 85.6
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 8.9e-69 264.2 225 71.6
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.4e-66 256.9 169 88.8
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 4.2e-66 255.4 195 82.1
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 7.1e-66 254.6 166 88.6
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 9.3e-66 254.2 222 66.7
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.6e-65 253.4 164 90.2
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 3.0e-64 249.2 199 78.9
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.6e-63 245.0 181 80.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.2e-62 241.5 148 97.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 4.0e-61 238.8 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.2e-60 237.3 193 75.1
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 79.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 7.9e-57 224.6 205 66.8
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.3e-56 223.8 137 97.1
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.7e-56 223.4 196 65.8
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 5.6e-55 218.4 166 77.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.4e-55 218.0 240 58.8
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 9.6e-55 217.6 158 74.1
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.2e-51 206.5 152 83.6
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 8.4e-51 204.5 139 77.0
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 8.4e-51 204.5 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.6e-49 200.3 162 75.9
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 7.9e-49 198.0 111 85.6
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.5e-47 193.0 163 65.0
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.4e-34 150.6 124 66.1
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 4.6e-33 145.6 127 61.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.9e-28 128.6 92 71.7
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.5e-27 124.8 202 42.1
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 2.5e-18 96.7 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 3.2e-18 96.3 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.0e-16 91.3 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.1e-07 61.2 60 53.3


User provided reference genes

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