Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.1e-299 1030.0 514 100.0
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-285 985.3 512 96.5
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.7e-280 967.6 512 94.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-279 966.1 512 94.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.8e-278 959.9 512 94.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 4.6e-270 934.1 512 91.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.5e-262 907.9 512 90.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.5e-262 907.9 512 90.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.8e-242 842.4 514 82.7
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 8.7e-237 823.5 513 81.5
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.8e-213 746.1 511 73.4
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.6e-209 732.3 514 72.2
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.0e-208 730.3 514 71.8
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.1e-206 721.1 514 69.8
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.5e-204 716.5 514 71.2
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 9.7e-204 713.8 515 69.7
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.1e-202 710.3 517 69.6
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 7.0e-202 707.6 515 69.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.1e-202 707.2 514 71.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.2e-201 706.8 516 70.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.2e-201 706.8 516 71.1
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.0e-201 706.1 516 69.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.7e-201 704.1 517 70.2
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.0e-200 703.7 514 70.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.3e-200 703.4 514 69.1
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-200 703.0 514 69.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.5e-199 699.1 514 68.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.0e-197 693.7 512 69.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.8e-197 693.0 513 68.4
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.0e-197 692.2 514 68.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 8.8e-197 690.6 540 67.0
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.6e-196 689.1 512 67.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 4.4e-196 688.3 514 65.8
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 7.5e-196 687.6 514 67.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.3e-195 686.8 514 67.5
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.7e-195 686.4 511 67.5
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.4e-194 682.6 513 67.6
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 4.1e-194 681.8 514 67.7
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.2e-193 680.2 510 67.1
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.5e-193 678.7 514 66.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.9e-192 675.6 439 77.2
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 3.8e-192 675.2 514 66.5
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 3.8e-192 675.2 598 60.4
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 8.6e-192 674.1 506 66.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 4.2e-191 671.8 513 65.1
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.8e-190 669.1 576 61.6
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 8.0e-190 667.5 510 65.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 8.0e-190 667.5 507 66.1
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 6.8e-189 664.5 514 67.5
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.6e-188 662.5 514 66.5
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 3.4e-188 662.1 528 65.0
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 7.5e-188 661.0 513 66.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.7e-187 659.8 513 66.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.7e-187 658.7 512 65.4
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 8.3e-187 657.5 514 65.6
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.2e-186 655.6 512 64.3
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 5.4e-186 654.8 507 65.1
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.1e-183 647.1 512 64.8
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.6e-183 644.8 513 62.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.3e-181 639.4 470 67.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 9.8e-180 634.0 513 63.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.7e-179 633.3 506 64.0
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.9e-179 632.5 515 63.1
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.7e-179 632.1 518 62.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.4e-178 630.2 515 62.5
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.1e-178 628.6 436 70.6
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 5.4e-178 628.2 474 66.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 7.0e-178 627.9 549 59.9
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 9.2e-178 627.5 453 69.8
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 9.2e-178 627.5 453 69.1
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.6e-177 626.7 513 62.4
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.7e-177 625.9 518 62.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 3.5e-177 625.5 495 67.3
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 4.6e-177 625.2 514 62.8
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 6.0e-177 624.8 514 63.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.0e-176 624.0 465 67.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-176 623.6 514 62.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.7e-176 623.2 506 62.3
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.7e-176 623.2 511 62.8
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.0e-176 622.5 514 62.6
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.0e-176 621.7 498 64.3
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 5.0e-176 621.7 511 62.4
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-175 620.5 493 64.1
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.9e-175 619.8 489 64.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.5e-175 619.4 493 64.1
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.8e-174 615.9 458 67.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.6e-174 615.5 483 65.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.7e-174 615.1 512 62.1
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-173 613.6 441 69.8
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.8e-173 613.2 482 63.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 3.1e-173 612.5 557 58.9
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.7e-171 606.7 490 63.3
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.2e-171 606.3 498 63.3
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.9e-171 605.9 457 67.4
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 3.2e-170 602.4 513 61.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.2e-169 600.5 435 68.5
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.1e-169 599.7 497 63.4
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 7.3e-167 591.3 454 64.5
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.7e-163 580.1 518 59.3
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 6.4e-163 578.2 507 59.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.5e-161 572.4 521 57.0
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.8e-161 571.2 472 61.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.9e-154 550.1 363 75.2
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 3.9e-152 542.3 460 60.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 9.6e-151 537.7 387 70.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-141 507.3 373 68.9
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 7.6e-140 501.5 499 53.5
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.9e-139 498.8 417 63.3
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 5.8e-132 475.3 487 53.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.2e-129 467.6 449 55.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.0e-123 448.0 389 61.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.8e-123 446.0 377 61.0
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.2e-113 414.5 514 45.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 7.4e-111 405.2 469 48.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.4e-109 400.2 445 48.3
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-108 396.4 393 57.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.5e-106 389.0 515 44.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.1e-98 364.8 277 65.3
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-97 360.5 321 61.1
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-76 291.6 391 45.3
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 4.3e-74 283.1 493 37.9
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.3e-72 277.3 488 38.1
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 6.4e-70 269.2 469 35.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.8e-65 253.8 250 55.2
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-55 221.9 163 69.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 9.8e-55 218.8 375 35.7
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.6e-52 211.5 209 56.5
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.6e-52 211.5 471 32.1
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 8.9e-40 169.1 250 40.0
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 6.6e-35 152.9 135 63.0
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 4.3e-34 150.2 204 40.7
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-31 142.1 92 76.1
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.0e-27 129.0 95 66.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.6e-26 123.2 357 26.9
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.9e-19 100.5 109 51.4
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.8e-14 84.0 55 72.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.6e-12 78.6 49 81.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.1e-11 73.6 44 72.7
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-10 70.1 66 60.6
Nitab4.5_0000031g0070 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.0e-07 61.6 256 27.3
Solyc04g025650.3 Solanum lycopersicum HOM05D000686 ORTHO05D000512 5.9e-07 60.1 415 23.6
DCAR_014050 Daucus carota HOM05D000686 ORTHO05D000512 7.6e-07 59.7 278 23.0
Sopen04g013330 Solanum pennellii HOM05D000686 ORTHO05D000512 1.0e-06 59.3 416 24.0
GSVIVG01038155001 Vitis vinifera HOM05D000263 ORTHO05D003675 1.3e-06 58.9 50 58.0


User provided reference genes

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