Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 0.0e+00 1092.4 562 100.0
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 2.0e-263 912.1 562 86.8
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 6.6e-254 880.6 478 94.8
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.2e-234 816.6 567 77.4
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 6.5e-201 704.5 567 67.9
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.2e-199 700.3 567 66.5
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 3.7e-196 688.7 567 65.8
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 2.5e-160 569.7 566 55.8
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 3.6e-159 565.8 565 55.9
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.6e-159 565.8 580 55.7
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 5.2e-158 562.0 571 55.0
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.6e-157 559.7 566 54.2
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 3.4e-157 559.3 572 55.2
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 6.3e-156 555.1 566 54.2
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.6e-154 550.4 597 53.3
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 1.6e-154 550.4 565 53.3
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 7.7e-154 548.1 549 56.5
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.0e-153 547.7 566 54.2
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 1.3e-153 547.4 572 53.3
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.3e-153 546.6 571 53.6
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.9e-153 546.2 566 54.1
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.8e-153 545.8 567 54.3
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 4.2e-152 542.3 569 54.3
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 4.2e-152 542.3 574 53.5
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 9.5e-152 541.2 568 53.3
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 9.5e-152 541.2 510 57.6
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.4e-150 537.3 569 53.6
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.5e-149 533.9 542 55.2
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.4e-148 528.5 574 53.0
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.7e-146 523.1 575 52.0
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 5.9e-146 521.9 565 52.2
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 1.0e-145 521.2 568 51.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.7e-145 520.4 569 51.0
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 5.6e-144 515.4 564 52.5
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 9.5e-144 514.6 561 51.7
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 4.7e-143 512.3 574 52.4
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 4.7e-143 512.3 568 51.8
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 3.1e-142 509.6 540 53.0
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 4.0e-142 509.2 568 50.4
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 6.8e-142 508.4 566 50.7
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 3.4e-141 506.1 566 52.1
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 2.2e-140 503.4 402 63.9
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 4.9e-140 502.3 579 49.9
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 9.2e-139 498.0 563 50.1
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.5e-138 496.1 516 54.7
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 6.0e-138 495.4 525 52.0
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 5.0e-137 492.3 565 47.8
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 6.6e-137 491.9 566 49.5
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.6e-136 488.8 572 50.2
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 7.3e-136 488.4 564 50.2
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.6e-135 487.3 566 51.1
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 8.1e-135 485.0 567 49.7
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 8.1e-135 485.0 578 47.6
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 3.1e-134 483.0 574 48.3
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 5.2e-134 482.3 536 50.6
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 6.8e-134 481.9 566 48.8
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 1.2e-133 481.1 563 50.1
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 1.7e-132 477.2 583 47.5
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 3.7e-132 476.1 565 48.3
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.7e-132 476.1 563 47.4
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 4.9e-132 475.7 564 48.0
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 6.4e-132 475.3 552 50.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.2e-131 473.0 557 48.8
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 5.4e-131 472.2 562 46.8
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 9.2e-131 471.5 558 47.8
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 9.2e-131 471.5 578 49.1
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.1e-128 464.5 561 46.5
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 9.5e-128 461.5 518 50.4
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.8e-127 459.9 568 47.4
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 3.6e-127 459.5 562 46.3
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 3.6e-127 459.5 402 61.2
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.6e-127 459.5 574 47.0
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 4.7e-127 459.1 562 46.3
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 8.1e-127 458.4 566 46.6
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.3e-126 456.8 578 49.1
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 4.0e-126 456.1 574 46.7
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 8.9e-126 454.9 563 46.2
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 2.6e-125 453.4 512 50.0
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 3.4e-125 453.0 565 45.8
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 3.4e-125 453.0 369 65.0
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.2e-124 450.3 529 48.0
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 4.1e-123 446.0 565 45.8
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 4.1e-123 446.0 565 45.8
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 9.2e-123 444.9 562 45.6
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 3.9e-121 439.5 563 47.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 6.6e-121 438.7 574 44.9
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.1e-115 421.4 596 43.5
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 6.0e-114 415.6 572 43.0
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 3.9e-113 412.9 577 44.7
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 1.9e-112 410.6 368 60.1
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.9e-112 410.6 571 45.4
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 1.3e-111 407.9 466 49.4
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.8e-110 404.1 365 58.4
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 6.9e-110 402.1 599 41.1
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 1.2e-106 391.3 574 42.3
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.3e-100 371.3 570 40.0
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.7e-100 370.9 570 40.0
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.9e-100 369.4 573 41.9
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 5.1e-97 359.4 414 47.3
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 8.7e-97 358.6 477 45.7
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 6.2e-95 352.4 250 71.2
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.9e-92 342.8 426 46.0
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 9.6e-88 328.6 366 52.5
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 2.5e-83 313.9 564 37.9
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 6.3e-71 272.7 575 35.8
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.0e-68 265.4 418 40.4
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.0e-64 251.1 185 70.3
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 2.2e-63 247.7 267 51.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 3.1e-62 243.8 411 38.4
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 4.0e-57 226.9 169 63.3
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 3.2e-51 207.2 269 47.6
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 6.1e-50 203.0 401 36.2
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 8.0e-50 202.6 336 40.2
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.4e-46 191.8 358 36.9
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.3e-44 185.3 135 70.4
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.5e-44 183.0 322 39.1
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 1.2e-42 178.7 134 70.9
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 6.1e-42 176.4 108 75.0
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 4.0e-33 147.1 208 41.8
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 5.2e-33 146.7 265 35.8
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 6.8e-33 146.4 397 29.7
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.1e-30 137.1 233 39.5
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.0e-28 131.0 130 53.8
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 5.0e-28 130.2 318 30.2
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.1e-27 129.0 164 53.7
FAN18G4360 Fragaria x ananassa HOM05D005719 ORTHO05D007030 8.0e-26 122.9 67 94.0
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 2.6e-24 117.9 141 48.9
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 3.7e-23 114.0 109 59.6
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 3.2e-22 110.9 250 32.4
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 6.0e-13 80.1 109 46.8
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 1.1e-11 75.9 411 22.1
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 1.1e-11 75.9 205 30.7
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.6e-10 72.0 106 38.7
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 8.4e-07 59.7 87 48.3
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 8.4e-07 59.7 87 48.3


User provided reference genes

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