Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1371 Fragaria x ananassa HOM05D000240 ORTHO05D018478 9.9e-74 280.0 142 100.0
RcHm_v2.0_Chr3g0479141 Rosa chinensis HOM05D000240 ORTHO05D001153 4.1e-19 98.6 69 76.8
FvH4_6g21780 Fragaria vesca HOM05D000240 ORTHO05D001153 1.6e-18 96.7 69 75.4
FAN14G2869 Fragaria x ananassa HOM05D000240 ORTHO05D001153 1.6e-18 96.7 69 75.4
Lalb_Chr18g0048051 Lupinus albus HOM05D000240 ORTHO05D001153 3.5e-18 95.5 69 73.9
FAN09G0747 Fragaria x ananassa HOM05D000240 ORTHO05D001153 7.7e-18 94.4 69 73.9
QL07p024632 Quercus lobata HOM05D000240 ORTHO05D001153 1.0e-17 94.0 69 72.5
CANSAT64G0666 Cannabis sativa HOM05D000240 ORTHO05D001153 2.3e-17 92.8 69 72.5
CiPaw.10G025000 Carya illinoinensis HOM05D000240 ORTHO05D001153 2.9e-17 92.4 69 69.6
Haze_20027 Corylus avellana HOM05D000240 ORTHO05D001153 2.9e-17 92.4 69 72.5
Haze_20029 Corylus avellana HOM05D000240 ORTHO05D001153 2.9e-17 92.4 69 72.5
Potri.006G194900 Populus trichocarpa HOM05D000240 ORTHO05D001153 2.9e-17 92.4 69 71.0
FAN02G1091 Fragaria x ananassa HOM05D000240 ORTHO05D001153 3.8e-17 92.0 69 72.5
Dinv16348 Davidia involucrata HOM05D000240 ORTHO05D001153 1.9e-16 89.7 69 68.1
Cfa020140 Carpinus fangiana HOM05D000240 ORTHO05D001153 2.5e-16 89.4 69 71.0
Lj1g0010273 Lotus japonicus HOM05D000240 ORTHO05D001153 2.5e-16 89.4 69 66.7
Sabra06G0149600 Salix brachista HOM05D000240 ORTHO05D001153 3.3e-16 89.0 69 69.6
Sabra16G0063300 Salix brachista HOM05D000240 ORTHO05D001153 3.3e-16 89.0 69 69.6
Potri.016G060400 Populus trichocarpa HOM05D000240 ORTHO05D001153 4.2e-16 88.6 69 68.1
Lalb_Chr15g0079121 Lupinus albus HOM05D000240 ORTHO05D001153 5.5e-16 88.2 69 68.1
Psat4g205240 Pisum sativum HOM05D000240 ORTHO05D001153 5.5e-16 88.2 69 68.1
Prupe.7G082400 Prunus persica HOM05D000240 ORTHO05D001153 5.5e-16 88.2 69 69.6
arahy.Tifrunner.gnm1.ann1.X6YTJY Arachis hypogaea HOM05D000240 ORTHO05D001153 7.2e-16 87.8 69 68.1
arahy.Tifrunner.gnm1.ann1.Y4ABT1 Arachis hypogaea HOM05D000240 ORTHO05D001153 7.2e-16 87.8 69 68.1
CiPaw.09G028000 Carya illinoinensis HOM05D000240 ORTHO05D001153 7.2e-16 87.8 69 69.6
Nn2g15753 Nelumbo nucifera HOM05D000240 ORTHO05D001153 9.5e-16 87.4 69 69.6
Medtr7g093720 Medicago truncatula HOM05D000240 ORTHO05D001153 1.2e-15 87.0 69 66.7
Ca_08543_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 1.6e-15 86.7 69 69.6
Duzib106G0177 Durio zibethinus HOM05D000240 ORTHO05D001153 2.1e-15 86.3 69 71.0
MD12G1054300 Malus domestica HOM05D000240 ORTHO05D001153 2.1e-15 86.3 69 66.7
Rhsim03G0003500 Rhododendron simsii HOM05D000240 ORTHO05D001153 2.1e-15 86.3 69 65.2
Thecc.05G175500 Theobroma cacao HOM05D000240 ORTHO05D001153 2.1e-15 86.3 69 71.0
Glyma.19G150300 Glycine max HOM05D000240 ORTHO05D001153 2.8e-15 85.9 69 66.7
TPR.G13356 Trifolium pratense HOM05D000240 ORTHO05D001153 3.6e-15 85.5 69 66.7
Nitab4.5_0000009g0240 Nicotiana tabacum HOM05D000240 ORTHO05D001153 4.7e-15 85.1 69 66.7
Ciclev10010972m.g Citrus clementina HOM05D000240 ORTHO05D001153 8.0e-15 84.3 69 69.6
Glyma.03G146900 Glycine max HOM05D000240 ORTHO05D001153 8.0e-15 84.3 69 65.2
Phvul.001G144600 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 8.0e-15 84.3 70 65.7
Atru.chr8.1163 Acer truncatum HOM05D000240 ORTHO05D001153 1.0e-14 84.0 69 68.1
ClCG04G001540 Citrullus lanatus HOM05D000240 ORTHO05D001153 1.0e-14 84.0 69 66.7
CsaV3_4G030980 Cucumis sativus L. HOM05D000240 ORTHO05D001153 1.0e-14 84.0 69 66.7
Cc06_g15540 Coffea canephora HOM05D000240 ORTHO05D001153 1.8e-14 83.2 69 65.2
Gohir.D04G097300 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.8e-14 83.2 68 69.1
Gorai.013G213600 Gossypium raimondii HOM05D000240 ORTHO05D001153 1.8e-14 83.2 68 69.1
Actinidia22061 Actinidia chinensis HOM05D000240 ORTHO05D001153 2.3e-14 82.8 69 63.8
MELO3C008977.2 Cucumis melo HOM05D000240 ORTHO05D001153 2.3e-14 82.8 69 65.2
Nitab4.5_0009361g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 2.3e-14 82.8 70 64.3
VMungo1383G0943 Vigna mungo HOM05D000240 ORTHO05D001153 3.0e-14 82.4 70 64.3
Gohir.A04G053900 Gossypium hirsutum HOM05D000240 ORTHO05D001153 4.0e-14 82.0 68 67.6
TAR633G0002 Trochodendron aralioides HOM05D000240 ORTHO05D001153 4.0e-14 82.0 68 64.7
GSVIVG01033462001 Vitis vinifera HOM05D000240 ORTHO05D001153 4.0e-14 82.0 69 66.7
Dinv24046 Davidia involucrata HOM05D000240 ORTHO05D001153 5.2e-14 81.6 69 66.7
ECA233G5745 Erigeron canadensis HOM05D000240 ORTHO05D001153 6.8e-14 81.3 82 56.1
Peaxi162Scf00463g00052 Petunia axillaris HOM05D000240 ORTHO05D001153 6.8e-14 81.3 69 63.8
TWI74G1299 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 8.9e-14 80.9 62 69.4
PSO384G3831 Papaver somniferum HOM05D000240 ORTHO05D001153 1.2e-13 80.5 75 61.3
Sed0005398 Sechium edule HOM05D000240 ORTHO05D001153 1.2e-13 80.5 69 62.3
TWI53G0194 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 1.2e-13 80.5 62 72.6
vmacro22627 Vaccinium macrocarpon HOM05D000240 ORTHO05D001153 1.2e-13 80.5 69 62.3
Sopen03g011650 Solanum pennellii HOM05D000240 ORTHO05D001153 1.5e-13 80.1 70 65.7
Aqoxy1G00040 Aquilegia oxysepala HOM05D000240 ORTHO05D001153 2.0e-13 79.7 69 65.2
Gorai.006G143900 Gossypium raimondii HOM05D000240 ORTHO05D001153 2.0e-13 79.7 69 65.2
Oeu046726.1 Olea europaea HOM05D000240 ORTHO05D001153 2.0e-13 79.7 69 63.8
PSO339G3051 Papaver somniferum HOM05D000240 ORTHO05D001153 2.6e-13 79.3 73 61.6
CSS0028166 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 3.4e-13 79.0 71 64.8
Eucgr.A02473 Eucalyptus grandis HOM05D000240 ORTHO05D001153 3.4e-13 79.0 69 63.8
Glyma.02G170500 Glycine max HOM05D000240 ORTHO05D001153 3.4e-13 79.0 59 72.9
Oeu022104.2 Olea europaea HOM05D000240 ORTHO05D001153 3.4e-13 79.0 69 62.3
Oeu033036.1 Olea europaea HOM05D000240 ORTHO05D001153 3.4e-13 79.0 69 62.3
SalBow6G3617 Salvia bowleyana HOM05D000240 ORTHO05D001153 3.4e-13 79.0 69 63.8
Hund24817 Selenicereus undatus HOM05D000240 ORTHO05D001153 3.4e-13 79.0 72 61.1
Cpa.g.sc85.44 Carica papaya HOM05D000240 ORTHO05D001153 4.4e-13 78.6 70 64.3
Gohir.D09G125000 Gossypium hirsutum HOM05D000240 ORTHO05D001153 4.4e-13 78.6 69 63.8
Nn7g35953 Nelumbo nucifera HOM05D000240 ORTHO05D001153 4.4e-13 78.6 99 49.5
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 5.7e-13 78.2 69 63.8
DCAR_019861 Daucus carota HOM05D000240 ORTHO05D001153 5.7e-13 78.2 69 60.9
Thhalv10019998m.g Eutrema salsugineum HOM05D000240 ORTHO05D001153 5.7e-13 78.2 59 72.9
Lalb_Chr04g0259551 Lupinus albus HOM05D000240 ORTHO05D001153 5.7e-13 78.2 68 58.8
MD14G1053100 Malus domestica HOM05D000240 ORTHO05D001153 5.7e-13 78.2 69 60.9
MSTRG.6496 Avicennia marina HOM05D000240 ORTHO05D001153 7.5e-13 77.8 70 60.0
Sp3g10250 Schrenkiella parvula HOM05D000240 ORTHO05D001153 7.5e-13 77.8 59 72.9
unitig_0.g525 Utricularia gibba HOM05D000240 ORTHO05D001153 7.5e-13 77.8 69 60.9
CAN.G1188.1 Capsicum annuum HOM05D000240 ORTHO05D001153 9.8e-13 77.4 70 58.6
THA.LOC104809938 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 9.8e-13 77.4 70 64.3
AUR62015327 Chenopodium quinoa HOM05D000240 ORTHO05D001153 1.3e-12 77.0 69 62.3
Carub.0006s0555 Capsella rubella HOM05D000240 ORTHO05D001153 1.7e-12 76.6 56 73.2
SGA_v2.0_scaffold69G23047 Striga asiatica HOM05D000240 ORTHO05D001153 2.2e-12 76.3 69 60.9
Carub.0003s1136 Capsella rubella HOM05D000240 ORTHO05D001153 2.8e-12 75.9 68 63.2
Thhalv10012568m.g Eutrema salsugineum HOM05D000240 ORTHO05D001153 2.8e-12 75.9 71 62.0
Migut.J01862 Erythranthe guttata HOM05D000240 ORTHO05D001153 3.7e-12 75.5 66 63.6
HanXRQChr13g0398351 Helianthus annuus HOM05D000240 ORTHO05D001153 3.7e-12 75.5 58 67.2
AT3G12020 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 6.3e-12 74.7 68 63.2
BolC1t05271H Brassica oleracea HOM05D000240 ORTHO05D018478 6.3e-12 74.7 55 72.7
AUR62012009 Chenopodium quinoa HOM05D000240 ORTHO05D001153 6.3e-12 74.7 69 60.9
VMungo0720G1256 Vigna mungo HOM05D000240 ORTHO05D001153 6.3e-12 74.7 62 67.7
BraA05t22527Z Brassica rapa HOM05D000240 ORTHO05D001153 8.3e-12 74.3 77 58.4
Lj2C363G10 Lonicera japonica HOM05D000240 ORTHO05D001153 8.3e-12 74.3 55 72.7
Phvul.007G261400 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 8.3e-12 74.3 71 62.0
Aa31LG3G5430 Aethionema arabicum HOM05D000240 ORTHO05D001153 1.1e-11 73.9 70 61.4
A05p37310 Brassica napus HOM05D000240 ORTHO05D001153 1.1e-11 73.9 52 76.9
C05p55780 Brassica napus HOM05D000240 ORTHO05D001153 1.1e-11 73.9 52 76.9
BolC5t34245H Brassica oleracea HOM05D000240 ORTHO05D001153 1.1e-11 73.9 52 76.9
CARHR086580 Cardamine hirsuta HOM05D000240 ORTHO05D001153 1.1e-11 73.9 68 61.8
Lsat_1_v5_gn_6_36540 Lactuca sativa HOM05D000240 ORTHO05D001153 1.1e-11 73.9 58 67.2
Hund19214 Selenicereus undatus HOM05D000240 ORTHO05D001153 1.1e-11 73.9 67 61.2
Actinidia32417 Actinidia chinensis HOM05D000240 ORTHO05D001153 1.4e-11 73.6 57 68.4
AT5G06670 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 1.4e-11 73.6 72 58.3
BraA01t04145Z Brassica rapa HOM05D000240 ORTHO05D018478 1.4e-11 73.6 55 70.9
arahy.Tifrunner.gnm1.ann1.I4SU3R Arachis hypogaea HOM05D000240 ORTHO05D018478 1.8e-11 73.2 68 57.4
SGA_v2.0_scaffold105G30511 Striga asiatica HOM05D000240 ORTHO05D001153 1.8e-11 73.2 69 59.4
EL10Ac3g06877 Beta vulgaris HOM05D000240 ORTHO05D001153 2.4e-11 72.8 69 59.4
BcaB06g25553 Brassica carinata HOM05D000240 ORTHO05D001153 2.4e-11 72.8 52 75.0
BcaB06g25554 Brassica carinata HOM05D000240 ORTHO05D001153 2.4e-11 72.8 52 75.0
CDE06G2231 Ceratophyllum demersum HOM05D000240 ORTHO05D001153 2.4e-11 72.8 80 55.0
Gohir.A09G129000 Gossypium hirsutum HOM05D000240 ORTHO05D001153 2.4e-11 72.8 69 60.9
AL3G23630 Arabidopsis lyrata HOM05D000240 ORTHO05D001153 3.1e-11 72.4 68 61.8
Sp6g36200 Schrenkiella parvula HOM05D000240 ORTHO05D001153 3.1e-11 72.4 49 79.6
BcaC09g48208 Brassica carinata HOM05D000240 ORTHO05D001153 4.1e-11 72.0 62 66.1
AL6G16760 Arabidopsis lyrata HOM05D000240 ORTHO05D001153 7.0e-11 71.2 72 58.3
HanXRQChr02g0054031 Helianthus annuus HOM05D000240 ORTHO05D001153 7.0e-11 71.2 60 60.0
C02p02800 Brassica napus HOM05D000240 ORTHO05D001153 9.2e-11 70.9 55 69.1
BolC2t06245H Brassica oleracea HOM05D000240 ORTHO05D001153 9.2e-11 70.9 55 69.1
CARHR206540 Cardamine hirsuta HOM05D000240 ORTHO05D001153 9.2e-11 70.9 54 70.4
MBI13_g29638_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001153 1.2e-10 70.5 69 59.4
BraA02t04888Z Brassica rapa HOM05D000240 ORTHO05D001153 3.5e-10 68.9 72 58.3
CDE07G1269 Ceratophyllum demersum HOM05D000240 ORTHO05D001153 3.8e-09 65.5 65 60.0
PGR004G0076 Punica granatum HOM05D000240 ORTHO05D001153 3.8e-09 65.5 49 69.4
HanXRQChr01g0024901 Helianthus annuus HOM05D000240 ORTHO05D001153 8.6e-09 64.3 59 62.7
Zm00001eb256570 Zea mays HOM05D000240 ORTHO05D001153 1.1e-08 63.9 51 68.6
ATR0598G334 Amborella trichopoda HOM05D000240 ORTHO05D001153 1.9e-08 63.2 64 54.7
HanXRQChr16g0529061 Helianthus annuus HOM05D000240 ORTHO05D001153 2.5e-08 62.8 62 58.1
HPP92_009323 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.5e-08 62.8 71 52.1
Zm00001eb193250 Zea mays HOM05D000240 ORTHO05D018478 3.3e-08 62.4 51 66.7
Zm00001eb373600 Zea mays HOM05D000240 ORTHO05D001153 4.3e-08 62.0 55 63.6
ECA248G3643 Erigeron canadensis HOM05D000240 ORTHO05D001153 7.3e-08 61.2 69 50.7
Glyma.09G108000 Glycine max HOM05D000240 ORTHO05D001153 9.5e-08 60.8 114 40.4
Lsat_1_v5_gn_1_61061 Lactuca sativa HOM05D000240 ORTHO05D001153 1.6e-07 60.1 75 49.3
Manes.09G038200 Manihot esculenta HOM05D000240 ORTHO05D001153 1.4e-06 57.0 69 46.4
arahy.Tifrunner.gnm1.ann1.KM01EC Arachis hypogaea HOM05D000229 ORTHO05D018478 1.8e-06 56.6 61 50.8
ATR0709G085 Amborella trichopoda HOM05D000240 ORTHO05D001153 4.0e-06 55.5 67 47.8


User provided reference genes

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