Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-212 743.0 374 100.0
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.1e-151 537.3 287 96.2
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.7e-147 525.0 287 94.4
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 6.8e-130 468.0 252 95.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.9e-117 425.6 252 85.7
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.8e-69 267.3 265 57.7
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.7e-62 243.4 264 54.2
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 5.5e-39 166.0 265 40.0
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.1e-34 151.8 267 38.6
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.8e-34 151.0 268 38.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 3.8e-32 143.3 266 38.0
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 6.1e-30 136.0 263 38.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.0e-29 135.2 261 39.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.0e-28 131.0 262 35.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.1e-26 123.6 269 37.2
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.1e-26 123.6 265 37.0
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 7.0e-26 122.5 254 38.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.0e-26 122.5 266 35.3
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 2.0e-25 120.9 272 37.1
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 7.7e-25 119.0 264 34.8
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.7e-24 117.9 264 34.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.9e-24 117.1 270 37.0
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.9e-24 117.1 278 33.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.8e-24 116.7 265 34.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.0e-24 116.3 261 39.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 6.5e-24 115.9 255 37.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.5e-23 114.8 264 33.7
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.2e-23 113.6 264 33.3
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.2e-23 113.2 270 35.2
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 7.2e-23 112.5 270 35.6
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.2e-22 111.7 313 32.9
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-22 110.9 267 34.5
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 2.7e-22 110.5 242 37.6
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.7e-22 110.5 280 33.2
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 8.0e-22 109.0 255 35.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.8e-21 107.8 255 38.0
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.8e-21 107.8 255 38.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.8e-21 107.8 271 35.4
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.0e-21 107.1 240 40.8
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.0e-21 107.1 264 32.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 5.2e-21 106.3 266 36.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.8e-21 105.5 255 38.4
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.4e-20 103.6 249 34.1
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.4e-20 103.6 249 39.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 5.7e-20 102.8 274 37.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.3e-19 101.7 270 34.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.7e-19 101.3 259 35.1
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 4.8e-19 99.8 240 39.2
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 8.3e-19 99.0 261 33.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.1e-18 98.6 248 34.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-18 98.6 259 35.5
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-18 98.6 278 33.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 3.1e-18 97.1 265 32.8
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 5.4e-18 96.3 248 39.5
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.4e-18 96.3 249 34.1
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 5.4e-18 96.3 258 35.3
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 9.1e-18 95.5 267 33.7
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.6e-17 94.7 251 36.3
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.5e-17 93.6 233 34.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 4.5e-17 93.2 251 35.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.5e-17 93.2 263 32.3
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 4.5e-17 93.2 247 35.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 5.9e-17 92.8 260 31.9
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 7.7e-17 92.4 251 34.3
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-16 91.7 265 35.8
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-16 91.7 248 33.9
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.3e-16 90.9 256 34.0
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 8.6e-16 89.0 266 35.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.1e-15 88.6 255 32.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.5e-15 88.2 259 34.0
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.5e-15 88.2 267 31.8
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.9e-15 87.8 268 29.1
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.9e-15 87.8 283 30.7
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.5e-15 87.4 274 33.6
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 3.3e-15 87.0 264 32.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.5e-15 86.3 249 33.7
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.2e-15 85.9 257 32.7
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 9.5e-15 85.5 254 34.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-14 84.7 248 33.9
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.1e-14 84.3 239 31.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.8e-14 84.0 233 32.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.6e-14 83.6 257 30.7
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.7e-14 83.2 254 34.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.8e-13 81.3 278 28.4
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.8e-13 81.3 271 32.1
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.8e-13 81.3 91 50.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.3e-13 80.9 249 32.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.3e-13 80.9 248 33.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.3e-13 80.9 246 35.8
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.0e-13 80.5 240 32.1
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.0e-13 80.1 254 32.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.0e-13 80.1 248 34.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 6.8e-13 79.3 258 34.1
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 8.9e-13 79.0 234 33.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.5e-12 78.2 259 32.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.5e-12 78.2 251 27.1
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.7e-11 74.7 273 31.5
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.2e-11 74.3 226 33.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.7e-11 73.6 234 32.9
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.9e-11 73.2 206 32.0
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.3e-11 72.4 254 32.3
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.1e-10 72.0 249 32.1
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.4e-10 71.6 182 33.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.8e-10 71.2 262 27.9
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.8e-10 71.2 262 27.9
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 3.2e-10 70.5 104 44.2
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.2e-10 70.5 112 42.9
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.0e-10 69.3 231 31.6
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.2e-10 68.9 203 34.0
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.6e-09 68.2 202 32.2
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.5e-09 66.6 230 30.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.0e-08 65.5 239 32.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.0e-08 65.5 213 29.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.3e-08 64.3 102 43.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 2.3e-08 64.3 117 41.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.3e-08 64.3 51 68.6
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 3.9e-08 63.5 252 28.2
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 5.0e-08 63.2 203 30.5
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 5.0e-08 63.2 195 32.8
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.6e-08 62.4 197 33.5
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-07 62.0 236 30.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-07 62.0 251 28.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.9e-07 61.2 90 42.2
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-07 61.2 102 42.2
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.9e-07 61.2 110 42.7
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.3e-07 60.5 61 50.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.3e-07 60.5 235 30.6
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 5.6e-07 59.7 256 28.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 9.5e-07 58.9 107 43.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.5e-07 58.9 107 43.9
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.5e-07 58.9 107 43.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-06 58.5 53 54.7
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.2e-06 58.5 73 43.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.1e-06 57.8 56 55.4
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.8e-06 57.4 51 60.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 3.6e-06 57.0 61 52.5
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 6.1e-06 56.2 126 34.1
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 8.0e-06 55.8 51 54.9
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.0e-06 55.8 51 54.9
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.0e-06 55.8 51 54.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 8.0e-06 55.8 54 50.0
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 8.0e-06 55.8 129 36.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 8.0e-06 55.8 51 58.8


User provided reference genes

Program Settings