Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1516.5 768 100.0
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1470.7 768 96.7
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1455.3 768 96.2
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 0.0e+00 1429.5 768 94.1
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1427.5 768 94.1
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 0.0e+00 1214.5 765 81.2
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 8.7e-241 837.4 784 58.8
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 2.4e-182 643.3 765 49.3
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 9.5e-179 631.3 549 63.0
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 7.5e-176 621.7 758 48.3
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 6.0e-165 585.5 765 45.5
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 1.1e-153 548.1 767 45.6
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 9.0e-153 545.0 761 43.8
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 1.7e-151 540.8 783 45.1
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 2.9e-151 540.0 782 43.4
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 4.2e-150 536.2 784 43.2
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 1.2e-149 534.6 749 43.7
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 1.5e-147 527.7 752 42.8
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 3.3e-147 526.6 763 44.6
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 9.6e-147 525.0 709 45.1
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 1.6e-146 524.2 745 43.8
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 1.6e-146 524.2 738 43.8
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 2.4e-145 520.4 734 43.3
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 3.4e-144 516.5 727 43.6
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 9.3e-142 508.4 764 42.0
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 6.7e-140 502.3 752 43.1
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 8.7e-140 501.9 733 42.7
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 2.5e-139 500.4 733 44.3
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 8.1e-138 495.4 748 42.1
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 1.8e-137 494.2 669 45.9
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 3.1e-137 493.4 801 41.3
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 2.6e-136 490.3 756 42.2
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 5.5e-126 456.1 739 40.5
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 1.1e-121 441.8 744 39.7
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 7.7e-120 435.6 704 41.2
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 1.1e-118 431.8 760 37.9
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 7.9e-117 425.6 757 37.6
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 2.0e-115 421.0 759 37.5
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 2.5e-115 420.6 797 37.3
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 1.7e-114 417.9 761 37.5
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 1.4e-113 414.8 668 41.0
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 1.8e-113 414.5 746 38.3
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 6.9e-113 412.5 756 36.6
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 2.6e-112 410.6 701 39.4
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 9.4e-110 402.1 761 37.5
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 9.7e-107 392.1 742 39.5
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 5.3e-105 386.3 767 36.8
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 2.6e-104 384.0 769 37.3
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 2.2e-103 380.9 695 38.0
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 5.2e-100 369.8 761 35.0
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 1.1e-99 368.6 693 36.2
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 2.0e-99 367.9 692 37.3
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 2.4e-97 360.9 696 36.5
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 1.0e-95 355.5 642 39.1
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 6.5e-95 352.8 701 35.9
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 8.5e-95 352.4 691 36.6
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 1.2e-93 348.6 478 45.6
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 4.0e-92 343.6 562 40.0
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.4e-89 335.1 591 37.9
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.8e-89 334.7 735 34.7
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 4.1e-89 333.6 788 34.0
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 1.0e-87 328.9 486 43.2
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 1.3e-87 328.6 701 35.5
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 2.5e-86 324.3 803 34.9
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 9.4e-86 322.4 799 33.5
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 1.2e-85 322.0 762 33.2
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 1.4e-84 318.5 779 32.0
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 1.4e-84 318.5 648 36.0
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 1.4e-84 318.5 761 32.9
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 1.5e-83 315.1 768 33.3
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 3.4e-83 313.9 720 34.0
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 6.3e-82 309.7 786 33.7
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 8.3e-82 309.3 786 33.6
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 2.4e-81 307.8 807 32.7
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 2.4e-81 307.8 744 33.6
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 1.0e-79 302.4 771 33.1
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 3.3e-78 297.4 787 32.9
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 4.2e-78 297.0 702 33.6
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 1.6e-77 295.0 787 33.3
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 4.7e-77 293.5 787 32.4
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 4.7e-77 293.5 708 33.9
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 9.8e-75 285.8 743 33.2
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 1.1e-73 282.3 512 36.3
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 3.1e-68 264.2 534 35.8
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 2.0e-67 261.5 780 31.4
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 2.6e-67 261.2 525 36.0
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 4.4e-67 260.4 701 30.2
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 1.3e-66 258.8 535 35.7
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 1.0e-63 249.2 750 31.7
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 1.3e-63 248.8 767 31.4
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 6.2e-61 240.0 603 33.2
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 3.1e-60 237.7 741 30.5
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 5.2e-60 236.9 637 32.5
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 1.6e-56 225.3 368 41.0
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 3.3e-54 217.6 754 27.9
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 8.1e-53 213.0 761 29.8
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 2.6e-51 208.0 719 28.4
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 4.4e-43 180.6 645 29.6
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 8.7e-39 166.4 349 34.7
RcHm_v2.0_Chr5g0040361 Rosa chinensis HOM05D006728 ORTHO05D007911 3.6e-37 161.0 101 79.2
Prupe.8G015600 Prunus persica HOM05D025481 ORTHO05D007911 6.6e-31 140.2 308 38.0
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 5.6e-30 137.1 249 36.9
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 2.8e-29 134.8 647 23.8
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 5.3e-28 130.6 744 24.2
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 4.2e-25 120.9 140 50.7
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 1.6e-24 119.0 280 35.7
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 3.7e-21 107.8 101 49.5
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 2.6e-19 101.7 128 47.7
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 2.9e-18 98.2 170 39.4
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 2.9e-18 98.2 558 26.2
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 5.1e-15 87.4 571 24.0
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 5.7e-14 84.0 151 35.8
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 1.2e-11 76.3 122 39.3
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 1.3e-10 72.8 81 43.2
Aqoxy1G01188 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 1.1e-06 59.7 64 50.0


User provided reference genes

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