Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1146 Fragaria x ananassa HOM05D000639 ORTHO05D210979 1.6e-112 409.5 215 100.0
FAN15G2667 Fragaria x ananassa HOM05D002561 ORTHO05D046538 2.1e-35 153.3 216 51.4
FAN01G0316 Fragaria x ananassa HOM05D000384 ORTHO05D012827 2.5e-20 103.2 79 77.2
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 3.6e-11 72.8 40 95.0
FAN12G1449 Fragaria x ananassa HOM05D000639 ORTHO05D004019 3.6e-11 72.8 40 95.0
MD13G1168500 Malus domestica HOM05D000639 ORTHO05D004019 3.6e-11 72.8 40 95.0
Manes.03G195300 Manihot esculenta HOM05D000639 ORTHO05D004019 3.6e-11 72.8 40 95.0
PGR031G2129 Punica granatum HOM05D000639 ORTHO05D004019 3.6e-11 72.8 40 95.0
Duzib151G0063 Durio zibethinus HOM05D000639 ORTHO05D004019 4.8e-11 72.4 40 92.5
Hma1.2p1_2670F.1_g326610 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 6.2e-11 72.0 43 88.4
Lj6C676T4 Lonicera japonica HOM05D000639 ORTHO05D004019 8.1e-11 71.6 40 92.5
Prupe.1G136600 Prunus persica HOM05D000639 ORTHO05D004019 8.1e-11 71.6 40 92.5
Rhsim04G0222300 Rhododendron simsii HOM05D000639 ORTHO05D004019 8.1e-11 71.6 40 92.5
Potri.010G014600 Populus trichocarpa HOM05D000639 ORTHO05D004019 1.1e-10 71.2 40 92.5
GSVIVG01017761001 Vitis vinifera HOM05D000639 ORTHO05D004019 1.1e-10 71.2 40 92.5
CiPaw.01G148600 Carya illinoinensis HOM05D000639 ORTHO05D004019 2.4e-10 70.1 40 90.0
Lj6g0003576 Lotus japonicus HOM05D000639 ORTHO05D004019 2.4e-10 70.1 40 90.0
Nitab4.5_0000570g0130 Nicotiana tabacum HOM05D000639 ORTHO05D004019 2.4e-10 70.1 40 90.0
Nitab4.5_0003466g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 2.4e-10 70.1 40 90.0
Peaxi162Scf00086g00431 Petunia axillaris HOM05D000639 ORTHO05D004019 2.4e-10 70.1 40 90.0
QL06p008928 Quercus lobata HOM05D000639 ORTHO05D004019 2.4e-10 70.1 40 90.0
Ah.06g184090 Amaranthus hybridus HOM05D000639 ORTHO05D004019 3.1e-10 69.7 40 90.0
TWI73G0330 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 3.1e-10 69.7 40 90.0
Ah.04g164890 Amaranthus hybridus HOM05D000639 ORTHO05D004019 4.0e-10 69.3 40 90.0
Ah.06g184080 Amaranthus hybridus HOM05D000639 ORTHO05D019441 4.0e-10 69.3 40 90.0
Ca_28415_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 4.0e-10 69.3 40 90.0
MD16G1168900 Malus domestica HOM05D000639 ORTHO05D004019 4.0e-10 69.3 40 90.0
Phvul.009G248200 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 4.0e-10 69.3 40 90.0
VMungo1309G0809 Vigna mungo HOM05D000639 ORTHO05D004019 4.0e-10 69.3 40 90.0
MSTRG.3915 Avicennia marina HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 87.5
CDE02G3502 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 90.0
CDE08G1566 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 90.0
HanXRQChr13g0411281 Helianthus annuus HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 87.5
Medtr2g436780 Medicago truncatula HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 87.5
Sc19g0005320 Simmondsia chinensis HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 90.0
unitig_748.g8732 Utricularia gibba HOM05D000639 ORTHO05D004019 5.3e-10 68.9 40 87.5
MBI19_g29220_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D004019 6.9e-10 68.6 40 90.0
ATR0796G199 Amborella trichopoda HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
Migut.G00162 Erythranthe guttata HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
Glyma.07G247300 Glycine max HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
Gohir.A10G164200 Gossypium hirsutum HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
Gorai.011G190400 Gossypium raimondii HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
Phvul.003G105500 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
SGA_v2.0_scaffold147G36295 Striga asiatica HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 87.5
THA.LOC104818926 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 9.0e-10 68.2 40 90.0
Atru.chr4.2839 Acer truncatum HOM05D000639 ORTHO05D004019 1.2e-09 67.8 40 87.5
MSTRG.10095 Avicennia marina HOM05D000639 ORTHO05D004019 1.2e-09 67.8 40 85.0
Gohir.A09G062500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.2e-09 67.8 40 85.0
Gohir.D09G061400 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.2e-09 67.8 40 85.0
Gorai.006G076000 Gossypium raimondii HOM05D000639 ORTHO05D004019 1.2e-09 67.8 40 85.0
Nn3g21443 Nelumbo nucifera HOM05D000639 ORTHO05D004019 1.2e-09 67.8 40 87.5
Oeu027725.1 Olea europaea HOM05D000639 ORTHO05D004019 1.2e-09 67.8 42 81.0
VMungo1215G1558 Vigna mungo HOM05D000639 ORTHO05D004019 1.5e-09 67.4 40 87.5
Actinidia01464 Actinidia chinensis HOM05D000639 ORTHO05D004019 2.0e-09 67.0 75 61.3
Cc03_g01920 Coffea canephora HOM05D000639 ORTHO05D004019 2.0e-09 67.0 40 87.5
Gohir.D10G170500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 2.0e-09 67.0 40 87.5
SalBow2G1467 Salvia bowleyana HOM05D000639 ORTHO05D004019 2.0e-09 67.0 40 85.0
Hund24894 Selenicereus undatus HOM05D000639 ORTHO05D004019 2.0e-09 67.0 40 87.5
TPR.G13846 Trifolium pratense HOM05D000639 ORTHO05D004019 2.0e-09 67.0 40 85.0
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 2.6e-09 66.6 40 87.5
CANSAT78G0502 Cannabis sativa HOM05D000639 ORTHO05D004019 2.6e-09 66.6 40 85.0
Ciclev10004703m.g Citrus clementina HOM05D000639 ORTHO05D004019 2.6e-09 66.6 75 61.3
FvH4_4g18050 Fragaria vesca HOM05D000639 ORTHO05D004019 2.6e-09 66.6 75 61.3
FAN17G3001 Fragaria x ananassa HOM05D000639 ORTHO05D004019 2.6e-09 66.6 80 58.8
HanXRQChr03g0080961 Helianthus annuus HOM05D000639 ORTHO05D004019 2.6e-09 66.6 40 85.0
Hma1.2p1_0078F.1_g040530 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 2.6e-09 66.6 75 60.0
Lalb_Chr13g0303571 Lupinus albus HOM05D000639 ORTHO05D004019 2.6e-09 66.6 40 85.0
vmacro15235 Vaccinium macrocarpon HOM05D000639 ORTHO05D004019 2.6e-09 66.6 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 3.4e-09 66.2 40 87.5
Sp3g05880 Schrenkiella parvula HOM05D000639 ORTHO05D004019 3.4e-09 66.2 40 85.0
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 3.4e-09 66.2 40 82.5
Solyc12g099560.2 Solanum lycopersicum HOM05D000639 ORTHO05D004019 3.4e-09 66.2 40 82.5
PGSC0003DMG400004710 Solanum tuberosum HOM05D000639 ORTHO05D004019 3.4e-09 66.2 40 82.5
Aqoxy2G02982 Aquilegia oxysepala HOM05D000639 ORTHO05D004019 4.5e-09 65.9 75 58.7
EL10Ac3g06602 Beta vulgaris HOM05D000639 ORTHO05D004019 4.5e-09 65.9 40 85.0
Carub.0003s0645 Capsella rubella HOM05D000639 ORTHO05D004019 4.5e-09 65.9 40 85.0
DCAR_027075 Daucus carota HOM05D000639 ORTHO05D004019 4.5e-09 65.9 40 85.0
ECA240G4511 Erigeron canadensis HOM05D000639 ORTHO05D004019 4.5e-09 65.9 40 85.0
Eucgr.B01318 Eucalyptus grandis HOM05D000639 ORTHO05D004019 4.5e-09 65.9 40 85.0
THA.LOC104802688 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 4.5e-09 65.9 40 85.0
Aa31LG5G17500 Aethionema arabicum HOM05D000639 ORTHO05D004019 5.8e-09 65.5 40 85.0
AL8G22390 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 5.8e-09 65.5 40 87.5
Carub.0008s0884 Capsella rubella HOM05D000639 ORTHO05D004019 5.8e-09 65.5 40 87.5
AUR62008114 Chenopodium quinoa HOM05D000639 ORTHO05D004019 5.8e-09 65.5 40 82.5
AUR62028692 Chenopodium quinoa HOM05D000639 ORTHO05D004019 5.8e-09 65.5 40 82.5
Dinv29742 Davidia involucrata HOM05D000714 ORTHO05D000544 5.8e-09 65.5 75 60.0
Gohir.A09G239000 Gossypium hirsutum HOM05D000639 ORTHO05D004019 5.8e-09 65.5 75 60.0
Gohir.D09G239900 Gossypium hirsutum HOM05D000639 ORTHO05D004019 5.8e-09 65.5 75 60.0
RcHm_v2.0_Chr4g0422261 Rosa chinensis HOM05D000639 ORTHO05D004019 5.8e-09 65.5 75 60.0
TAR365G0782 Trochodendron aralioides HOM05D000639 ORTHO05D004019 5.8e-09 65.5 40 82.5
vmacro08153 Vaccinium macrocarpon HOM05D000639 ORTHO05D004019 5.8e-09 65.5 75 60.0
Lalb_Chr15g0083501 Lupinus albus HOM05D000639 ORTHO05D004019 7.6e-09 65.1 40 85.0
Pp3c1_7870 Physcomitrium patens HOM05D000639 ORTHO05D004019 7.6e-09 65.1 40 85.0
AL3G18100 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
AT3G06930 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
AT5G49020 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 85.0
BcaC05g29770 Brassica carinata HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
BcaC05g29823 Brassica carinata HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
A05p41240 Brassica napus HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
C05p60460 Brassica napus HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
BolC5t34700H Brassica oleracea HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
BraA05t22847Z Brassica rapa HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 82.5
CSS0034707 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 9.9e-09 64.7 75 60.0
Duzib212G0808 Durio zibethinus HOM05D000639 ORTHO05D004019 9.9e-09 64.7 75 58.7
Gorai.006G262700 Gossypium raimondii HOM05D000639 ORTHO05D004019 9.9e-09 64.7 75 58.7
Os07g0671700 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D004019 9.9e-09 64.7 40 80.0
CAN.G484.33 Capsicum annuum HOM05D000639 ORTHO05D004019 1.3e-08 64.3 40 80.0
CARHR081540 Cardamine hirsuta HOM05D000639 ORTHO05D004019 1.3e-08 64.3 40 80.0
COL.COLO4_13868 Corchorus olitorius HOM05D000639 ORTHO05D004019 1.3e-08 64.3 75 58.7
Glyma.09G044700 Glycine max HOM05D000639 ORTHO05D004019 1.3e-08 64.3 75 60.0
Glyma.15G148200 Glycine max HOM05D000639 ORTHO05D004019 1.3e-08 64.3 75 58.7
Thecc.04G284900 Theobroma cacao HOM05D000639 ORTHO05D004019 1.3e-08 64.3 75 58.7
Nn4g25839 Nelumbo nucifera HOM05D000639 ORTHO05D004019 1.7e-08 63.9 75 57.3
SMO118G0363 Selaginella moellendorffii HOM05D000639 ORTHO05D004019 1.7e-08 63.9 40 82.5
arahy.Tifrunner.gnm1.ann1.KA48HN Arachis hypogaea HOM05D000639 ORTHO05D004019 2.2e-08 63.5 75 58.7
arahy.Tifrunner.gnm1.ann1.LR2V9P Arachis hypogaea HOM05D000639 ORTHO05D004019 2.2e-08 63.5 75 58.7
BcaC03g17691 Brassica carinata HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
A02p37840 Brassica napus HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
A06p38610 Brassica napus HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
C02p57000 Brassica napus HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
C07p39650 Brassica napus HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
BolC2t11770H Brassica oleracea HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
BolC7t44488H Brassica oleracea HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
BraA02t08766Z Brassica rapa HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
BraA06t26776Z Brassica rapa HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
CAN.G449.33 Capsicum annuum HOM05D000639 ORTHO05D004019 2.2e-08 63.5 75 58.7
CARHR286220 Cardamine hirsuta HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 85.0
Thhalv10003986m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
Lalb_Chr12g0196591 Lupinus albus HOM05D000639 ORTHO05D004019 2.2e-08 63.5 75 57.3
Potri.008G222700 Populus trichocarpa HOM05D000639 ORTHO05D004019 2.2e-08 63.5 75 57.3
Sp2g19400 Schrenkiella parvula HOM05D000639 ORTHO05D004019 2.2e-08 63.5 40 82.5
Cpa.g.sc16.172 Carica papaya HOM05D000639 ORTHO05D004019 2.9e-08 63.2 75 58.7
CiPaw.02G082800 Carya illinoinensis HOM05D000639 ORTHO05D004019 2.9e-08 63.2 75 58.7
Glyma.17G026500 Glycine max HOM05D000639 ORTHO05D004019 2.9e-08 63.2 75 57.3
Nitab4.5_0001233g0100 Nicotiana tabacum HOM05D000639 ORTHO05D004019 2.9e-08 63.2 75 57.3
Nitab4.5_0001904g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 2.9e-08 63.2 75 57.3
PGSC0003DMG400008452 Solanum tuberosum HOM05D000639 ORTHO05D004019 2.9e-08 63.2 75 57.3
PSO302G0100 Papaver somniferum HOM05D000639 ORTHO05D004019 3.8e-08 62.8 40 82.5
TAR362G0702 Trochodendron aralioides HOM05D000639 ORTHO05D004019 4.9e-08 62.4 75 56.0
Zm00001eb111180 Zea mays HOM05D000639 ORTHO05D004019 4.9e-08 62.4 40 77.5
BcaB07g34210 Brassica carinata HOM05D000639 ORTHO05D004019 6.4e-08 62.0 56 64.3
CSS0036548 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 6.4e-08 62.0 46 73.9
Cfa015385 Carpinus fangiana HOM05D000639 ORTHO05D004019 6.4e-08 62.0 75 56.0
Oeu029702.2 Olea europaea HOM05D000639 ORTHO05D004019 6.4e-08 62.0 77 55.8
Psat0s3456g0080 Pisum sativum HOM05D000639 ORTHO05D004019 6.4e-08 62.0 75 57.3
TWI09G1119 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 6.4e-08 62.0 75 57.3
Zm00001eb330380 Zea mays HOM05D000639 ORTHO05D004019 6.4e-08 62.0 40 77.5
Ca_21493_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 8.4e-08 61.6 75 57.3
Lj4g0016454 Lotus japonicus HOM05D000639 ORTHO05D004019 8.4e-08 61.6 75 57.3
Medtr4g119900 Medicago truncatula HOM05D000639 ORTHO05D004019 8.4e-08 61.6 75 57.3
TPR.G3204 Trifolium pratense HOM05D000639 ORTHO05D004019 8.4e-08 61.6 75 57.3
Actinidia40256 Actinidia chinensis HOM05D000639 ORTHO05D004019 1.1e-07 61.2 75 58.7
Solyc05g054240.3 Solanum lycopersicum HOM05D000639 ORTHO05D004019 1.1e-07 61.2 75 56.0
Sopen05g032730 Solanum pennellii HOM05D000639 ORTHO05D004019 1.4e-07 60.8 75 54.7
Lsat_1_v5_gn_5_53081 Lactuca sativa HOM05D000639 ORTHO05D004019 1.9e-07 60.5 75 56.0
Actinidia14303 Actinidia chinensis HOM05D000639 ORTHO05D004019 2.4e-07 60.1 75 58.7
CSS0043025 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 3.2e-07 59.7 75 56.0
Lalb_Chr20g0115971 Lupinus albus HOM05D000639 ORTHO05D019441 3.2e-07 59.7 40 77.5
C06p30940 Brassica napus HOM05D000517 ORTHO05D019904 4.2e-07 59.3 40 75.0
ClCG06G005130 Citrullus lanatus HOM05D000639 ORTHO05D004019 4.2e-07 59.3 75 56.0
MELO3C021330.2 Cucumis melo HOM05D000639 ORTHO05D004019 4.2e-07 59.3 75 56.0
CsaV3_6G017170 Cucumis sativus L. HOM05D000639 ORTHO05D004019 4.2e-07 59.3 75 56.0
Sed0022843 Sechium edule HOM05D000639 ORTHO05D004019 4.2e-07 59.3 75 54.7
Haze_01200 Corylus avellana HOM05D000639 ORTHO05D004019 5.5e-07 58.9 47 66.0
Thhalv10020486m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 5.5e-07 58.9 75 54.7
Dinv44380 Davidia involucrata HOM05D000639 ORTHO05D004019 7.1e-07 58.5 40 77.5
Lj3C817G11 Lonicera japonica HOM05D000639 ORTHO05D004019 9.3e-07 58.2 75 56.0
Lj3C819G5 Lonicera japonica HOM05D000639 ORTHO05D004019 9.3e-07 58.2 75 56.0
Pp3c11_14160 Physcomitrium patens HOM05D000639 ORTHO05D004019 1.6e-06 57.4 40 75.0
DCAR_023284 Daucus carota HOM05D000639 ORTHO05D004019 2.7e-06 56.6 43 67.4
PSO210G5853 Papaver somniferum HOM05D000639 ORTHO05D004019 2.7e-06 56.6 75 54.7
Psat0s3456g0120 Pisum sativum HOM05D000639 ORTHO05D019441 2.7e-06 56.6 30 96.7


User provided reference genes

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