Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.5e-71 271.6 140 100.0
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 4.0e-51 204.9 134 80.6
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.5e-42 176.4 139 69.8
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 5.8e-34 147.9 105 74.3
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.2e-33 146.0 105 74.3
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 8.4e-33 144.1 108 70.4
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-31 140.2 106 72.6
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.3e-30 136.7 82 80.5
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.5e-29 132.5 93 67.7
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 5.6e-29 131.3 82 76.8
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 7.4e-29 131.0 107 64.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 9.6e-29 130.6 93 66.7
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 9.6e-29 130.6 93 67.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 1.6e-28 129.8 110 65.5
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.6e-28 129.8 84 75.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 3.6e-28 128.6 80 73.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.1e-27 127.1 113 61.1
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.1e-27 127.1 85 74.1
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.4e-27 126.7 133 57.1
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.8e-27 126.3 72 83.3
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 3.1e-27 125.6 115 60.0
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 4.0e-27 125.2 98 68.4
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 6.9e-27 124.4 112 58.9
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 6.9e-27 124.4 105 60.0
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.2e-26 123.6 88 70.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 2.0e-26 122.9 112 60.7
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 4.5e-26 121.7 72 79.2
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 4.5e-26 121.7 93 63.4
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 5.8e-26 121.3 106 64.2
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 5.8e-26 121.3 93 62.4
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 7.6e-26 120.9 84 67.9
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 9.9e-26 120.6 116 55.2
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.7e-25 119.8 103 63.1
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.7e-25 119.8 137 55.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 3.8e-25 118.6 107 58.9
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 4.9e-25 118.2 103 60.2
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 4.9e-25 118.2 103 60.2
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 8.4e-25 117.5 79 67.1
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.1e-24 117.1 96 64.6
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.1e-24 117.1 96 62.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.9e-24 116.3 99 62.6
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.4e-24 115.9 85 67.1
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 3.2e-24 115.5 142 50.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 4.2e-24 115.2 80 67.5
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 5.5e-24 114.8 99 60.6
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 5.5e-24 114.8 105 58.1
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 7.1e-24 114.4 85 68.2
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.2e-23 113.6 102 62.7
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.7e-23 112.5 105 56.2
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 3.5e-23 112.1 104 56.7
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 7.9e-23 110.9 102 57.8
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 7.9e-23 110.9 105 55.2
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 7.9e-23 110.9 105 55.2
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.3e-22 110.2 103 57.3
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.8e-22 109.8 72 70.8
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.1e-22 108.2 105 54.3
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 5.1e-22 108.2 82 63.4
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 6.7e-22 107.8 82 63.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.5e-21 106.7 94 58.5
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.9e-21 106.3 118 50.8
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 3.3e-21 105.5 118 50.8
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.3e-21 105.5 107 56.1
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 4.3e-21 105.1 93 58.1
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 5.6e-21 104.8 122 48.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 5.6e-21 104.8 122 48.4
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 7.4e-21 104.4 118 52.5
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.6e-20 103.2 113 52.2
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.1e-20 102.8 93 57.0
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 3.7e-20 102.1 103 55.3
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.1e-19 100.5 119 51.3
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.1e-19 100.5 81 61.7
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.4e-19 100.1 118 50.8
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.4e-19 100.1 81 59.3
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.8e-19 99.8 90 61.1
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.8e-19 99.8 65 69.2
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 2.4e-19 99.4 118 49.2
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.4e-19 99.4 52 86.5
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 3.1e-19 99.0 118 49.2
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.1e-19 99.0 61 77.0
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 5.3e-19 98.2 79 59.5
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 9.0e-19 97.4 109 50.5
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.2e-18 97.1 69 65.2
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 2.0e-18 96.3 118 48.3
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 2.6e-18 95.9 113 49.6
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.4e-18 95.5 98 52.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 4.5e-18 95.1 73 60.3
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 5.8e-18 94.7 61 72.1
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 7.6e-18 94.4 66 63.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.7e-17 93.2 106 50.0
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.7e-17 93.2 106 50.0
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 4.9e-17 91.7 67 62.7
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.9e-16 89.7 96 51.0
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 5.5e-16 88.2 94 52.1
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 5.5e-16 88.2 72 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 7.1e-16 87.8 63 60.3
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.6e-15 86.7 46 87.0
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 2.1e-15 86.3 94 51.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 7.9e-15 84.3 95 51.6
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.0e-14 84.0 85 49.4
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.3e-14 83.6 153 35.9
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.0e-14 82.4 97 51.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 3.0e-14 82.4 93 49.5
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 9.6e-13 77.4 107 38.3
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 9.6e-13 77.4 64 60.9
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 1.6e-12 76.6 66 59.1
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.7e-12 75.5 43 79.1
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 1.1e-11 73.9 54 64.8
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 9.0e-11 70.9 46 69.6
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.2e-10 70.5 83 42.2
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.0e-09 67.4 63 49.2


User provided reference genes

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