Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.8e-167 590.9 311 100.0
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 6.6e-147 524.2 311 91.3
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.6e-138 493.8 307 86.0
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 3.8e-134 481.9 307 84.7
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 6.4e-126 454.5 311 78.1
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.1e-124 449.5 265 91.3
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.2e-116 423.7 238 93.7
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.0e-95 353.2 311 64.0
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 7.2e-93 344.7 311 62.4
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.7e-78 297.0 316 54.7
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 2.2e-78 296.6 315 55.2
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 6.5e-78 295.0 315 56.5
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.2e-76 290.8 311 57.2
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 4.7e-76 288.9 338 53.3
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.4e-74 282.7 315 54.3
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.7e-73 280.4 290 55.5
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.4e-72 276.6 315 52.7
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 7.0e-72 275.0 315 52.1
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.5e-71 272.7 315 52.1
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 4.5e-71 272.3 312 52.6
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 7.7e-71 271.6 309 51.5
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 7.7e-71 271.6 296 54.7
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 3.8e-70 269.2 312 51.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 1.2e-68 264.2 352 46.9
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 3.6e-68 262.7 289 55.4
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.0e-67 261.2 307 52.1
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.3e-67 260.0 301 53.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 6.8e-67 258.5 315 50.8
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.2e-66 257.7 316 48.7
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 5.7e-66 255.4 302 52.3
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 2.2e-65 253.4 315 47.3
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.3e-65 251.9 301 50.8
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.8e-64 250.4 307 49.2
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.4e-64 250.0 317 47.9
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 7.0e-64 248.4 279 53.8
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 1.2e-63 247.7 316 48.7
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.6e-63 247.3 299 50.8
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.6e-63 247.3 305 47.9
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.5e-63 246.1 305 47.9
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 5.9e-63 245.4 302 49.3
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.0e-62 244.6 303 48.8
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.3e-62 244.2 315 46.7
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.9e-62 243.0 303 50.2
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.9e-62 243.0 308 47.4
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 8.6e-62 241.5 299 49.2
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.1e-61 241.1 317 47.9
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 1.5e-61 240.7 294 48.0
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.9e-61 240.4 314 46.5
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.6e-60 237.3 332 44.3
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.1e-60 236.9 302 49.7
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 6.1e-60 235.3 264 49.2
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 8.0e-60 235.0 301 47.8
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 1.4e-59 234.2 310 45.5
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.8e-59 233.8 337 44.8
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 2.3e-59 233.4 301 47.5
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 4.0e-59 232.6 305 45.2
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 1.2e-58 231.1 303 46.9
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.2e-58 231.1 317 46.1
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 1.5e-58 230.7 307 46.6
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.5e-58 230.7 284 51.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 3.4e-58 229.6 308 45.5
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.4e-58 229.6 302 47.4
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 1.3e-57 227.6 313 43.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.3e-57 227.6 314 46.5
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.3e-57 227.6 305 46.9
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 6.4e-57 225.3 336 44.9
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 8.3e-57 224.9 314 46.8
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 3.2e-56 223.0 306 46.1
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 9.2e-56 221.5 309 45.3
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.6e-55 220.7 140 82.1
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.7e-55 219.9 296 45.6
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 3.5e-55 219.5 304 45.1
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 4.6e-55 219.2 302 45.7
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 6.0e-55 218.8 292 46.9
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 6.0e-55 218.8 297 46.8
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.0e-54 216.5 317 43.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 3.9e-54 216.1 314 45.2
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.3e-53 213.0 256 46.1
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 4.3e-53 212.6 292 43.5
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 5.6e-53 212.2 307 42.3
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 5.6e-53 212.2 315 43.8
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 5.6e-53 212.2 304 42.8
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 2.1e-52 210.3 238 48.3
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.6e-52 209.5 301 42.5
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.4e-51 207.6 311 40.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.4e-51 207.6 304 42.1
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.3e-51 206.8 304 42.8
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 6.8e-51 205.3 288 44.1
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 8.9e-51 204.9 270 45.6
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.5e-50 204.1 365 40.0
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 4.4e-50 202.6 288 44.4
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 4.4e-50 202.6 288 44.4
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 4.4e-50 202.6 317 42.6
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.4e-48 197.6 261 44.1
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.4e-48 197.6 308 39.9
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.9e-48 197.2 261 44.1
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.9e-48 197.2 261 44.1
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 2.4e-48 196.8 281 42.7
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.2e-48 196.4 261 44.8
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.2e-48 196.4 266 42.9
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 5.4e-48 195.7 270 45.2
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 9.2e-48 194.9 275 41.8
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 2.1e-47 193.7 305 41.3
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 2.7e-47 193.4 300 41.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 3.5e-47 193.0 259 44.0
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 4.6e-47 192.6 313 39.0
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.3e-46 191.0 258 44.6
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.3e-46 191.0 245 49.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 3.0e-46 189.9 313 38.3
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 3.0e-46 189.9 299 41.8
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 8.6e-46 188.3 310 41.6
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.5e-45 187.6 306 40.2
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 7.3e-45 185.3 318 39.9
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 3.6e-44 183.0 232 49.1
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 4.7e-44 182.6 277 40.8
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.4e-43 181.0 296 42.6
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.8e-43 180.6 312 42.3
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.3e-41 174.5 253 43.5
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.9e-40 170.6 192 49.0
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.4e-40 169.1 311 37.6
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.3e-38 163.7 225 44.4
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 3.0e-38 163.3 225 44.4
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 3.9e-38 162.9 233 43.8
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 5.1e-38 162.5 305 36.7
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 2.6e-34 150.2 185 48.1
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 7.6e-34 148.7 280 35.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 6.4e-33 145.6 205 42.4
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 4.6e-31 139.4 307 33.9
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.0e-30 138.3 253 37.9
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.4e-27 127.9 317 33.4
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 3.1e-27 126.7 231 32.9
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 5.3e-27 125.9 299 33.4
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 6.9e-27 125.6 200 40.0
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 4.4e-26 122.9 200 38.0
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.3e-25 121.3 152 47.4
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 3.5e-23 113.2 270 33.3
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.1e-21 108.2 160 41.9
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 9.6e-21 105.1 240 31.7
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 4.8e-20 102.8 185 35.7
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 8.1e-20 102.1 231 32.0
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 6.9e-19 99.0 186 33.3
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 3.4e-18 96.7 135 43.0
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 9.9e-18 95.1 105 46.7
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 6.0e-15 85.9 219 31.5
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.6e-12 77.8 65 56.9
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 9.0e-11 72.0 95 46.3
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 5.8e-10 69.3 106 34.0
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 7.6e-10 68.9 79 49.4
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 3.2e-08 63.5 91 33.0
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 2.7e-07 60.5 99 40.4
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 4.6e-07 59.7 189 27.0


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