Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1498.4 730 100.0
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1484.5 730 98.8
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1479.5 728 98.5
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1478.4 728 98.4
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1478.4 728 98.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1459.5 730 96.7
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1411.4 734 92.8
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1400.2 734 91.6
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1385.9 734 90.6
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1363.2 733 88.1
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1335.9 734 86.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1335.5 731 86.6
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1333.9 731 86.9
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1333.9 733 86.2
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1332.0 730 86.7
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1329.7 733 86.2
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1329.3 731 85.0
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1328.9 731 85.9
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1328.5 732 85.9
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 731 86.2
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 731 86.0
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1325.1 731 85.8
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1324.3 742 85.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1323.9 734 86.0
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 730 86.7
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1321.6 730 85.1
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1320.1 731 85.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 734 85.1
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 732 85.0
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 730 85.5
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1318.1 732 85.4
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1317.0 730 85.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1317.0 732 85.5
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1316.6 732 85.4
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1316.2 730 85.3
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1315.4 732 85.2
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1315.4 733 85.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 732 85.0
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 732 85.0
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 732 85.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1312.4 732 85.2
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1312.4 732 85.2
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 733 85.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 730 84.5
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 732 84.2
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 738 84.1
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 732 85.1
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 730 85.8
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 737 84.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 735 84.6
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 733 84.2
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 730 84.7
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 724 85.8
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 730 85.5
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1304.7 732 84.8
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1303.1 734 84.2
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 730 85.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 749 83.7
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 774 81.4
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 731 84.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 733 83.9
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1295.8 731 84.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1295.8 775 80.6
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1295.4 735 83.9
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 731 84.5
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 733 82.9
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 732 84.0
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1292.3 697 86.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 731 84.3
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 730 84.1
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 730 83.6
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1283.5 730 83.7
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 723 84.1
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1278.8 780 78.8
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1278.8 780 78.8
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 828 76.6
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 730 83.2
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1270.4 731 82.5
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 730 82.7
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 730 82.9
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 782 78.6
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 731 82.9
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 731 82.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 730 82.7
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 730 82.7
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 731 83.2
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 731 83.2
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1264.6 730 82.7
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1264.6 731 82.5
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 730 82.5
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1262.3 730 82.5
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 730 82.6
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1251.5 728 81.3
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 705 82.3
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 732 81.3
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1236.5 663 87.9
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 732 81.4
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1232.6 737 80.1
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1227.2 730 81.6
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1226.5 733 79.3
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1226.1 743 80.1
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 743 79.9
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 730 84.4
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 752 78.3
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 742 79.8
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1212.2 659 86.9
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 735 80.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1205.3 720 79.6
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1201.0 665 86.6
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1192.9 735 78.0
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1192.2 730 78.2
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1164.4 741 74.1
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1158.3 733 74.8
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1151.3 616 88.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 696 77.3
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 705 75.9
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1133.6 734 73.4
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1129.0 616 86.0
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1101.3 737 71.2
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1100.9 585 88.7
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 5.0e-312 1073.9 706 73.1
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 6.0e-311 1070.5 753 71.3
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 4.1e-288 994.6 735 66.1
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.0e-286 987.6 701 69.8
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.1e-285 986.5 726 64.6
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.2e-285 984.6 732 64.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.2e-262 909.1 655 66.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.2e-258 896.7 690 61.0
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 4.8e-257 891.3 667 63.7
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 8.3e-257 890.6 505 85.0
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 4.2e-253 878.2 569 74.2
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.8e-249 865.5 697 59.7
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.6e-236 823.2 705 57.7
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 4.9e-233 811.6 783 53.6
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.3e-229 798.9 502 75.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 6.4e-217 758.1 417 84.7
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 7.6e-210 734.6 701 52.8
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.8e-188 662.1 422 74.2
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.1e-163 581.3 377 74.0
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 2.6e-154 550.1 300 88.3
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.1e-147 528.1 317 79.8
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.0e-147 525.4 357 71.1
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 3.8e-145 519.6 311 81.0
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.8e-142 510.8 359 74.4
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.5e-128 461.8 340 66.5
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.2e-115 420.2 297 68.7
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.1e-105 386.3 314 61.1
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 7.3e-96 355.9 183 84.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-92 343.6 209 76.1
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.2e-83 313.9 429 47.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.2e-76 291.2 352 48.9
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.5e-72 278.5 168 73.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-70 271.9 220 65.0
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.2e-66 258.8 216 60.2
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-64 251.9 201 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.7e-48 196.8 219 45.7
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-45 189.1 131 64.1
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-44 185.7 206 53.9
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 2.9e-44 184.5 208 52.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-43 181.8 101 78.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 3.4e-32 144.4 80 76.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 7.0e-30 136.7 138 54.3
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 5.0e-28 130.6 161 49.7
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 4.9e-23 114.0 101 57.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.8e-22 112.1 61 77.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 7.0e-22 110.2 60 86.7
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.7e-21 108.2 185 38.4
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.5e-21 107.8 185 38.4
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.3e-20 105.9 127 52.0
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 4.7e-18 97.4 145 44.8
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.2e-16 92.8 111 46.8
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 5.7e-16 90.5 50 80.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-12 77.4 89 49.4
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 8.6e-12 76.6 71 57.7
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 1.5e-11 75.9 45 84.4
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 1.2e-10 72.8 50 72.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 8.0e-10 70.1 264 28.8
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 5.8e-08 63.9 40 72.5
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.3e-07 62.8 46 69.6
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 1.3e-07 62.8 34 85.3
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 6.4e-07 60.5 44 75.0


User provided reference genes

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