Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.3e-225 786.2 424 100.0
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 7.5e-210 733.8 428 94.6
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.4e-208 729.6 426 94.8
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 4.1e-208 728.0 426 94.8
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.3e-205 718.4 425 93.4
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 3.4e-170 602.1 401 83.0
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 9.1e-107 391.3 389 62.5
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 3.3e-104 382.9 368 63.0
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 1.3e-100 370.9 388 61.1
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 2.8e-87 326.6 362 55.8
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 5.8e-85 318.9 361 52.4
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 1.3e-84 317.8 373 51.5
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 2.2e-84 317.0 356 54.8
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 3.7e-84 316.2 368 52.4
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 1.4e-83 314.3 365 52.6
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 2.4e-83 313.5 365 51.5
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 2.1e-82 310.5 369 49.9
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 1.0e-81 308.1 357 53.2
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 1.0e-81 308.1 359 51.3
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 8.6e-81 305.1 366 53.0
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 1.1e-80 304.7 383 51.4
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.1e-80 304.7 378 52.1
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 2.5e-80 303.5 353 54.7
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 5.6e-80 302.4 383 48.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 5.6e-80 302.4 354 52.5
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 7.3e-80 302.0 352 54.0
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 3.6e-79 299.7 368 50.5
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 4.7e-79 299.3 359 51.0
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 4.7e-79 299.3 357 51.0
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 6.8e-78 295.4 401 47.6
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 2.0e-77 293.9 363 50.7
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 2.6e-77 293.5 364 49.7
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 5.8e-77 292.4 380 51.1
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 1.3e-76 291.2 364 50.0
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 2.2e-76 290.4 386 48.2
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 1.4e-75 287.7 374 47.9
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.6e-74 284.3 363 49.9
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 8.6e-73 278.5 388 46.1
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 5.6e-72 275.8 352 49.1
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 2.8e-71 273.5 366 47.5
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 3.6e-71 273.1 386 45.1
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 4.7e-71 272.7 364 50.5
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.1e-70 270.0 385 45.5
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.1e-70 270.0 389 45.8
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 5.2e-70 269.2 374 44.9
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 6.8e-70 268.9 360 47.8
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 6.8e-70 268.9 372 47.8
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 1.5e-69 267.7 371 45.8
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.0e-69 267.3 374 44.7
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 2.6e-69 266.9 376 44.9
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 4.4e-69 266.2 370 46.8
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 9.9e-69 265.0 365 43.8
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 1.7e-68 264.2 368 45.7
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.7e-68 264.2 350 49.4
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 8.4e-68 261.9 361 45.7
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 1.4e-67 261.2 359 43.5
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 4.2e-67 259.6 366 46.7
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 1.2e-66 258.1 370 43.5
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 1.6e-66 257.7 367 44.1
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 2.7e-66 256.9 349 47.9
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 4.6e-66 256.1 362 47.5
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 6.0e-66 255.8 366 45.4
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 3.0e-65 253.4 379 44.3
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 7.3e-64 248.8 356 46.9
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 3.6e-63 246.5 391 42.7
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 4.7e-63 246.1 363 43.5
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 4.7e-63 246.1 390 42.6
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 6.2e-63 245.7 332 44.3
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 4.0e-62 243.0 371 44.7
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 2.0e-61 240.7 349 46.1
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 3.4e-61 240.0 369 44.7
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 4.4e-61 239.6 366 45.9
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 7.6e-61 238.8 331 46.2
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 9.9e-61 238.4 353 42.8
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.1e-59 235.0 355 45.6
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 3.2e-59 233.4 351 46.2
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 7.1e-59 232.3 353 45.3
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 3.5e-58 229.9 355 45.1
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 2.5e-56 223.8 344 43.3
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 7.3e-56 222.2 361 39.6
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 2.1e-55 220.7 319 43.9
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.6e-55 219.9 361 39.6
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 3.6e-55 219.9 264 51.9
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.8e-54 217.6 334 43.7
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 5.3e-54 216.1 344 43.3
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 4.6e-50 203.0 343 41.1
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 1.0e-49 201.8 394 36.0
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 8.1e-47 192.2 211 54.5
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 4.0e-46 189.9 329 40.4
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 6.9e-46 189.1 277 45.5
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 2.9e-44 183.7 376 37.5
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 3.8e-44 183.3 390 34.9
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 1.4e-43 181.4 387 35.9
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.5e-43 180.6 263 43.7
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 1.3e-39 168.3 328 38.1
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 2.8e-39 167.2 388 34.5
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 2.8e-39 167.2 357 36.7
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 5.3e-38 162.9 304 38.2
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 2.2e-36 157.5 340 36.8
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 2.9e-36 157.1 211 47.4
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 6.5e-36 156.0 311 38.6
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 1.4e-35 154.8 282 36.5
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.0e-33 147.1 176 46.0
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 3.7e-31 140.2 355 32.1
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 1.1e-30 138.7 368 29.3
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.1e-30 138.7 299 35.5
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.5e-29 134.8 353 31.4
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 5.9e-29 132.9 359 31.5
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 5.9e-29 132.9 352 31.0
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 5.9e-29 132.9 356 30.9
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 1.7e-28 131.3 356 30.6
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 5.0e-28 129.8 356 30.9
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 5.0e-28 129.8 370 31.1
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 8.5e-28 129.0 358 29.6
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-27 128.6 346 30.6
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.1e-27 128.6 346 30.6
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 9.4e-27 125.6 365 27.9
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 4.6e-26 123.2 345 29.0
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 6.1e-26 122.9 346 30.1
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 6.7e-25 119.4 359 29.0
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.1e-24 118.6 365 28.2
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-24 118.6 329 29.2
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.3e-23 115.2 264 34.8
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.3e-23 115.2 282 30.1
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.7e-23 114.8 357 29.1
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 2.8e-23 114.0 301 29.2
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 3.7e-23 113.6 315 30.2
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 4.8e-23 113.2 313 29.7
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 4.8e-23 113.2 301 29.2
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-22 112.1 313 29.4
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 1.5e-16 91.7 329 26.1
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 5.7e-16 89.7 237 29.5
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 7.4e-16 89.4 221 29.4
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.7e-15 88.2 284 28.5
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 6.3e-15 86.3 271 27.3
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 3.5e-13 80.5 133 36.8
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.8e-12 77.0 132 34.1
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-11 75.1 195 32.3
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-11 75.1 195 32.3
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-11 75.1 195 32.3
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 3.2e-11 73.9 226 27.4
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 8.0e-10 69.3 143 29.4
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 8.0e-10 69.3 143 29.4
Manes.09G186700 Manihot esculenta HOM05D000592 ORTHO05D000900 7.4e-08 62.8 252 25.0
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 1.8e-06 58.2 159 27.0
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.8e-06 58.2 160 30.6
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.8e-06 58.2 161 30.4
Migut.K01041 Erythranthe guttata HOM05D000592 ORTHO05D000900 2.4e-06 57.8 82 36.6
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 3.1e-06 57.4 160 30.6
Actinidia30596 Actinidia chinensis HOM05D000592 ORTHO05D000900 4.1e-06 57.0 90 36.7
AL4G12100 Arabidopsis lyrata HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
AT2G22560 Arabidopsis thaliana HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
BcaB08g35098 Brassica carinata HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
Carub.0004s0172 Capsella rubella HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
CARHR113750 Cardamine hirsuta HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
Thhalv10000036m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
Sp4g01600 Schrenkiella parvula HOM05D001877 ORTHO05D001886 9.1e-06 55.8 74 39.2
Hund18054 Selenicereus undatus HOM05D000592 ORTHO05D000900 9.1e-06 55.8 192 27.6


User provided reference genes

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