Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0918 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.3e-85 319.7 161 100.0
FvH4_5g18840 Fragaria vesca HOM05D005281 ORTHO05D006351 1.1e-76 290.0 153 96.7
FAN18G0195 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.6e-75 286.2 151 96.7
FAN18G1830 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.8e-70 267.7 151 92.1
FAN04G3220 Fragaria x ananassa HOM05D005281 ORTHO05D006351 3.0e-66 255.4 151 88.7
RcHm_v2.0_Chr7g0203221 Rosa chinensis HOM05D005281 ORTHO05D006351 5.6e-41 171.4 156 66.7
RcHm_v2.0_Chr7g0203081 Rosa chinensis HOM05D005281 ORTHO05D006351 2.0e-30 136.3 149 55.0
FAN18G1833 Fragaria x ananassa HOM05D005281 ORTHO05D006351 3.2e-28 129.0 153 55.6
FAN13G0267 Fragaria x ananassa HOM05D005281 ORTHO05D006351 7.2e-28 127.9 168 51.2
FAN08G2328 Fragaria x ananassa HOM05D005281 ORTHO05D006351 3.6e-27 125.6 168 51.2
FAN04G2173 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.0e-26 124.0 153 54.2
FvH4_5g18730 Fragaria vesca HOM05D005281 ORTHO05D006351 4.8e-24 115.2 137 55.5
Thecc.09G301700 Theobroma cacao HOM05D005281 ORTHO05D006351 1.5e-17 93.6 194 35.1
MD11G1074600 Malus domestica HOM05D005281 ORTHO05D006351 3.3e-17 92.4 198 36.9
FAN25G0418 Fragaria x ananassa HOM05D005281 ORTHO05D006351 7.4e-17 91.3 194 36.1
COL.COLO4_19159 Corchorus olitorius HOM05D005281 ORTHO05D006351 2.2e-16 89.7 195 36.4
RcHm_v2.0_Chr5g0069461 Rosa chinensis HOM05D005281 ORTHO05D006351 2.2e-16 89.7 196 38.3
FvH4_3g38560 Fragaria vesca HOM05D005281 ORTHO05D006351 2.8e-16 89.4 194 35.6
Prupe.6G057400 Prunus persica HOM05D005281 ORTHO05D006351 2.8e-16 89.4 209 37.3
QL01p038286 Quercus lobata HOM05D005281 ORTHO05D006351 4.8e-16 88.6 209 35.9
MD03G1070600 Malus domestica HOM05D005281 ORTHO05D006351 1.1e-15 87.4 198 36.4
arahy.Tifrunner.gnm1.ann1.EQN3LQ Arachis hypogaea HOM05D005281 ORTHO05D006351 2.4e-15 86.3 207 33.3
GSVIVG01024739001 Vitis vinifera HOM05D005281 ORTHO05D006351 2.4e-15 86.3 200 34.0
Lj6g0025988 Lotus japonicus HOM05D005281 ORTHO05D006351 3.1e-15 85.9 216 32.9
arahy.Tifrunner.gnm1.ann1.UVB96A Arachis hypogaea HOM05D005281 ORTHO05D006351 5.3e-15 85.1 207 33.3
Rhsim01G0236400 Rhododendron simsii HOM05D005281 ORTHO05D006351 5.3e-15 85.1 207 33.3
TPR.G21171 Trifolium pratense HOM05D005281 ORTHO05D006351 6.9e-15 84.7 211 31.8
Ca_14931_v3 Cicer arietinum L. HOM05D005281 ORTHO05D006351 9.1e-15 84.3 211 32.7
Dinv14436 Davidia involucrata HOM05D005281 ORTHO05D006351 1.2e-14 84.0 200 33.5
Duzib168G1083 Durio zibethinus HOM05D005281 ORTHO05D006351 2.6e-14 82.8 196 32.1
Lj1C137G10 Lonicera japonica HOM05D005281 ORTHO05D006351 2.6e-14 82.8 193 34.7
Medtr3g463770 Medicago truncatula HOM05D005281 ORTHO05D006351 1.0e-13 80.9 210 30.5
CANSAT54G2372 Cannabis sativa HOM05D005281 ORTHO05D006351 1.7e-13 80.1 209 31.6
FAN16G1244 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.9e-13 79.3 211 33.2
FAN11G1688 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.0e-13 78.6 211 32.7
Lalb_Chr18g0050941 Lupinus albus HOM05D005281 ORTHO05D006351 5.0e-13 78.6 212 31.1
AUR62020131 Chenopodium quinoa HOM05D005281 ORTHO05D006351 8.5e-13 77.8 175 34.9
Hund04860 Selenicereus undatus HOM05D005281 ORTHO05D006351 8.5e-13 77.8 201 32.8
Psat5g159280 Pisum sativum HOM05D005281 ORTHO05D006351 1.1e-12 77.4 198 30.8
Aqoxy4G02562 Aquilegia oxysepala HOM05D005281 ORTHO05D006351 1.4e-12 77.0 210 31.0
Gorai.001G116100 Gossypium raimondii HOM05D005281 ORTHO05D006351 1.4e-12 77.0 192 31.2
TAR633G1154 Trochodendron aralioides HOM05D005281 ORTHO05D006351 1.4e-12 77.0 210 30.5
Duzib150G1450 Durio zibethinus HOM05D005281 ORTHO05D006351 1.9e-12 76.6 176 34.1
Gohir.A07G104200 Gossypium hirsutum HOM05D005281 ORTHO05D006351 1.9e-12 76.6 192 32.3
HanXRQChr08g0229401 Helianthus annuus HOM05D005281 ORTHO05D006351 1.9e-12 76.6 187 33.2
SGA_v2.0_scaffold120G32911 Striga asiatica HOM05D005281 ORTHO05D006351 1.9e-12 76.6 193 31.6
Gohir.D07G108000 Gossypium hirsutum HOM05D005281 ORTHO05D006351 2.5e-12 76.3 192 30.2
Atru.chr3.4219 Acer truncatum HOM05D005281 ORTHO05D006351 3.2e-12 75.9 190 32.6
Hma1.2p1_0962F.1_g241910 Hydrangea macrophylla HOM05D005281 ORTHO05D006351 3.2e-12 75.9 204 32.8
FAN21G2151 Fragaria x ananassa HOM05D005281 ORTHO05D006351 4.2e-12 75.5 216 31.5
Potri.009G046300 Populus trichocarpa HOM05D005281 ORTHO05D006351 4.2e-12 75.5 207 31.4
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 5.5e-12 75.1 210 31.9
vmacro14592 Vaccinium macrocarpon HOM05D005281 ORTHO05D006351 7.2e-12 74.7 225 30.2
AUR62001645 Chenopodium quinoa HOM05D005281 ORTHO05D006351 9.4e-12 74.3 215 31.2
PSO339G3076 Papaver somniferum HOM05D005281 ORTHO05D006351 1.2e-11 73.9 189 31.7
TWI31G0978 Tripterygium wilfordii HOM05D005281 ORTHO05D006351 1.2e-11 73.9 201 31.8
ECA247G0807 Erigeron canadensis HOM05D005281 ORTHO05D006351 2.1e-11 73.2 199 32.2
Nitab4.5_0000102g0060 Nicotiana tabacum HOM05D005281 ORTHO05D006351 3.6e-11 72.4 199 31.2
Eucgr.J01912 Eucalyptus grandis HOM05D005281 ORTHO05D006351 4.7e-11 72.0 195 29.2
Peaxi162Scf00025g00089 Petunia axillaris HOM05D005281 ORTHO05D006351 6.1e-11 71.6 202 31.7
CiPaw.14G059500 Carya illinoinensis HOM05D005281 ORTHO05D006351 8.0e-11 71.2 194 30.9
Migut.N00784 Erythranthe guttata HOM05D005281 ORTHO05D006351 8.0e-11 71.2 199 30.2
Glyma.18G063000 Glycine max HOM05D005281 ORTHO05D006351 8.0e-11 71.2 191 29.8
Nitab4.5_0005463g0020 Nicotiana tabacum HOM05D005281 ORTHO05D006351 1.0e-10 70.9 199 31.7
Ciclev10028198m.g Citrus clementina HOM05D005281 ORTHO05D006351 1.4e-10 70.5 196 31.1
Manes.01G161500 Manihot esculenta HOM05D005281 ORTHO05D006351 1.4e-10 70.5 203 29.1
PGSC0003DMG400004159 Solanum tuberosum HOM05D005281 ORTHO05D006351 2.3e-10 69.7 199 32.7
Cpa.g.sc415.3 Carica papaya HOM05D005281 ORTHO05D006351 3.9e-10 68.9 203 30.0
PGR119G1117 Punica granatum HOM05D005281 ORTHO05D006351 5.2e-10 68.6 150 34.7
Sopen06g002070 Solanum pennellii HOM05D005281 ORTHO05D006351 5.2e-10 68.6 199 33.2
Cc01_g14190 Coffea canephora HOM05D005281 ORTHO05D006351 6.7e-10 68.2 194 32.5
Carub.0008s1934 Capsella rubella HOM05D005281 ORTHO05D006351 1.1e-09 67.4 166 32.5
FAN24G2658 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.3e-09 65.9 53 69.8
Sabra09G0033400 Salix brachista HOM05D005281 ORTHO05D006351 4.4e-09 65.5 76 50.0
AL8G35000 Arabidopsis lyrata HOM05D005281 ORTHO05D006351 5.7e-09 65.1 167 32.9
Glyma.11G175400 Glycine max HOM05D005281 ORTHO05D006351 5.7e-09 65.1 194 27.8
SalBow2G0889 Salvia bowleyana HOM05D005281 ORTHO05D006351 5.7e-09 65.1 68 48.5
Thhalv10013268m.g Eutrema salsugineum HOM05D005281 ORTHO05D006351 7.4e-09 64.7 137 34.3
Sed0014563 Sechium edule HOM05D005281 ORTHO05D006351 7.4e-09 64.7 176 31.2
Aa31LG11G480 Aethionema arabicum HOM05D005281 ORTHO05D006351 9.7e-09 64.3 171 30.4
Nn2g11502 Nelumbo nucifera HOM05D005281 ORTHO05D006351 9.7e-09 64.3 219 28.8
ClCG02G019550 Citrullus lanatus HOM05D005281 ORTHO05D006351 1.3e-08 63.9 202 28.2
Sp6g20410 Schrenkiella parvula HOM05D005281 ORTHO05D006351 1.3e-08 63.9 137 32.1
CARHR272630 Cardamine hirsuta HOM05D005281 ORTHO05D006351 2.2e-08 63.2 171 31.0
VMungo0540G0631 Vigna mungo HOM05D005281 ORTHO05D006351 2.2e-08 63.2 194 27.3
DCAR_007376 Daucus carota HOM05D005281 ORTHO05D006351 2.8e-08 62.8 190 30.0
THA.LOC104799394 Tarenaya hassleriana HOM05D005281 ORTHO05D006351 2.8e-08 62.8 150 30.7
CiPaw.11G172400 Carya illinoinensis HOM05D004205 ORTHO05D004977 3.7e-08 62.4 109 29.4
EL10Ac7g16168 Beta vulgaris HOM05D005281 ORTHO05D006351 4.8e-08 62.0 164 31.1
Oeu045534.1 Olea europaea HOM05D005281 ORTHO05D006351 6.3e-08 61.6 55 56.4
Zm00001eb119510 Zea mays HOM05D005281 ORTHO05D006351 8.2e-08 61.2 71 43.7
AT5G58720 Arabidopsis thaliana HOM05D005281 ORTHO05D006351 1.1e-07 60.8 168 30.4
A03p12060 Brassica napus HOM05D005281 ORTHO05D006351 1.4e-07 60.5 135 31.9
BraA03t10518Z Brassica rapa HOM05D005281 ORTHO05D006351 1.4e-07 60.5 135 31.9
Dinv08307 Davidia involucrata HOM05D004205 ORTHO05D004977 1.4e-07 60.5 122 30.3
Dinv20162 Davidia involucrata HOM05D004205 ORTHO05D004977 1.4e-07 60.5 122 30.3
A02p07560 Brassica napus HOM05D005281 ORTHO05D006351 2.4e-07 59.7 111 38.7
BraA02t05834Z Brassica rapa HOM05D005281 ORTHO05D006351 2.4e-07 59.7 111 38.7
Os02g0639700 Oryza sativa ssp. japonica HOM05D004205 ORTHO05D004977 2.4e-07 59.7 192 27.6
C03p14150 Brassica napus HOM05D005281 ORTHO05D006351 3.1e-07 59.3 136 33.8
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 4.1e-07 58.9 187 28.3
BcaB05g22447 Brassica carinata HOM05D005281 ORTHO05D006351 5.3e-07 58.5 57 49.1
CSS0032517 Camellia sinensis var. sinensis HOM05D004205 ORTHO05D004977 5.3e-07 58.5 127 27.6
BcaB01g04640 Brassica carinata HOM05D005281 ORTHO05D006351 7.0e-07 58.2 136 33.8
BcaC03g14078 Brassica carinata HOM05D005281 ORTHO05D006351 7.0e-07 58.2 64 50.0
C02p13130 Brassica napus HOM05D005281 ORTHO05D006351 7.0e-07 58.2 64 50.0
BolC2t07431H Brassica oleracea HOM05D005281 ORTHO05D006351 7.0e-07 58.2 64 50.0
BolC3t13861H Brassica oleracea HOM05D005281 ORTHO05D006351 7.0e-07 58.2 136 33.8
CsaV3_6G016220 Cucumis sativus L. HOM05D005281 ORTHO05D006351 7.0e-07 58.2 204 28.4
CAN.G1213.5 Capsicum annuum HOM05D005281 ORTHO05D006351 1.2e-06 57.4 212 27.8
HPP92_005265 Vanilla planifolia HOM05D005281 ORTHO05D006351 1.2e-06 57.4 141 30.5
Lj1C846T14 Lonicera japonica HOM05D004205 ORTHO05D004977 1.6e-06 57.0 123 30.9
MBI14_g42908_MAGBIO Magnolia biondii HOM05D005281 ORTHO05D006351 1.6e-06 57.0 204 27.5
Prupe.4G184000 Prunus persica HOM05D004205 ORTHO05D004977 3.5e-06 55.8 103 32.0
MBI17_g30523_MAGBIO Magnolia biondii HOM05D004205 ORTHO05D004977 4.5e-06 55.5 123 30.9


User provided reference genes

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