Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.5e-311 1070.8 568 100.0
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-271 938.7 589 86.1
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 6.6e-270 933.7 590 86.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-268 929.1 590 86.1
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.7e-268 927.5 546 88.5
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.9e-237 825.9 529 81.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.9e-202 708.0 548 67.3
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.0e-201 704.9 596 66.8
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 8.5e-201 704.1 547 66.9
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.6e-186 656.8 548 63.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.5e-186 655.6 547 62.5
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.3e-185 652.9 544 63.6
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.3e-184 648.7 550 62.7
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 4.3e-184 648.7 547 64.0
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 6.4e-180 634.8 582 60.1
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.4e-179 632.9 552 61.6
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 4.1e-179 632.1 549 60.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.6e-178 630.2 548 61.7
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 5.0e-177 625.2 554 61.2
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.6e-177 624.8 570 59.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 8.6e-177 624.4 550 60.0
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.6e-175 619.0 574 59.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.8e-174 616.7 553 58.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 4.0e-174 615.5 598 56.0
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 5.2e-174 615.1 546 60.1
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 6.8e-174 614.8 550 58.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 3.4e-173 612.5 560 60.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 7.5e-173 611.3 526 63.3
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.5e-173 611.3 544 59.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.5e-173 611.3 541 60.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.1e-171 605.5 546 59.0
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.6e-170 603.6 550 57.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.6e-170 603.6 535 60.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.0e-170 601.7 546 59.5
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 7.3e-168 594.7 550 58.7
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 7.3e-168 594.7 548 57.8
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.6e-167 593.6 595 56.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.7e-167 592.0 555 58.2
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.0e-166 589.0 549 58.3
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 5.2e-166 588.6 541 57.7
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.5e-165 587.0 548 57.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.5e-165 584.7 545 57.8
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 7.5e-165 584.7 559 56.9
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 8.3e-164 581.3 575 55.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.9e-163 580.1 505 59.4
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 9.2e-163 577.8 549 57.0
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.1e-162 576.6 588 54.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.7e-162 576.2 551 56.8
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.5e-162 575.9 547 57.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 3.5e-162 575.9 569 55.2
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 7.8e-162 574.7 489 61.3
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.0e-161 574.3 570 56.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.3e-161 573.2 546 57.5
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 3.0e-161 572.8 548 56.8
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.9e-161 572.4 547 57.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.1e-161 572.0 586 52.6
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.1e-160 570.9 547 57.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.5e-160 570.5 552 56.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.5e-160 570.5 586 52.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.2e-159 567.4 539 57.0
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.6e-159 567.0 560 56.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.1e-159 566.6 574 55.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 4.7e-159 565.5 591 52.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.1e-158 564.3 584 53.1
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.4e-158 563.1 586 52.7
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.4e-157 559.3 546 55.1
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.4e-157 558.9 469 62.9
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.7e-156 557.0 351 81.5
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.0e-153 547.7 550 54.4
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.9e-152 543.5 548 54.6
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 7.3e-152 541.6 573 52.9
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.4e-150 537.3 541 54.9
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.8e-150 537.0 517 56.1
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 5.3e-150 535.4 509 56.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 4.4e-149 532.3 577 52.0
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.9e-148 529.6 527 54.6
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.9e-148 529.6 534 54.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.8e-148 529.3 527 54.5
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.9e-148 528.9 527 55.4
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.4e-148 528.5 541 53.4
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.4e-147 527.3 537 53.4
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.9e-147 526.9 534 54.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.6e-146 523.9 540 53.1
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.1e-146 523.5 531 53.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 6.0e-146 521.9 524 53.4
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.0e-145 521.2 402 62.9
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.0e-145 521.2 549 52.6
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.1e-145 518.8 594 49.7
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-144 517.7 525 53.1
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.9e-144 516.9 589 50.4
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.2e-143 511.9 558 51.3
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.4e-142 510.0 548 52.4
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 3.1e-142 509.6 548 51.8
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 5.3e-142 508.8 564 50.2
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 8.4e-140 501.5 524 51.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.5e-138 496.1 401 61.8
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 7.4e-136 488.4 534 52.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.1e-135 486.9 470 54.9
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.1e-135 486.9 535 50.7
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.8e-135 485.7 528 50.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 3.1e-134 483.0 587 47.2
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 5.3e-134 482.3 569 48.5
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 9.0e-134 481.5 443 55.5
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 9.0e-134 481.5 559 51.0
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.9e-132 475.7 541 48.6
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 7.1e-131 471.9 588 46.4
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.0e-129 468.0 553 49.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 3.9e-129 466.1 336 67.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 5.1e-129 465.7 544 48.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 4.3e-128 462.6 399 56.9
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.4e-126 456.8 586 46.2
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 4.0e-126 456.1 487 48.7
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.4e-123 447.6 427 53.9
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.7e-122 443.4 550 46.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.5e-122 443.0 547 48.1
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.6e-122 442.6 376 57.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.0e-121 441.4 359 61.6
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.5e-120 437.6 466 52.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.9e-117 425.6 270 71.9
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.8e-116 422.9 554 44.0
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 8.5e-116 421.8 526 48.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.8e-113 414.1 546 47.4
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.3e-110 402.5 408 49.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.0e-108 396.0 420 48.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 5.0e-108 396.0 429 47.8
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 8.5e-108 395.2 279 64.2
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.1e-107 394.8 422 48.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.2e-107 392.9 500 44.0
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 4.2e-107 392.9 386 51.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.5e-107 392.5 513 44.1
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.5e-107 392.5 513 44.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 9.4e-107 391.7 500 43.8
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-106 391.3 399 48.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.6e-106 389.8 500 43.8
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.7e-106 389.4 487 45.2
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.6e-104 383.6 503 42.9
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.3e-103 379.0 499 44.9
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.2e-101 374.8 358 53.4
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.2e-99 366.7 444 45.7
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.6e-98 364.4 285 58.2
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-98 364.0 529 40.8
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 2.1e-98 364.0 529 40.8
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 3.6e-98 363.2 520 41.7
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 3.6e-98 363.2 520 41.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.4e-96 356.3 226 71.2
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.8e-92 343.2 446 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.2e-91 339.7 553 38.3
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.8e-87 327.0 208 71.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.3e-86 322.8 208 70.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.2e-85 321.6 430 45.8
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.2e-83 313.5 482 41.9
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.5e-77 293.5 269 50.9
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.5e-56 224.9 563 33.2
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.7e-55 221.5 318 45.3
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 4.9e-55 219.9 163 64.4
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.0e-53 213.0 130 76.9
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 4.6e-45 186.8 351 39.3
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.1e-41 175.6 260 37.3
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 6.4e-39 166.4 238 46.6
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 7.1e-38 162.9 137 56.9
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.1e-38 162.9 105 72.4
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 7.8e-37 159.5 161 52.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.3e-36 158.7 596 27.7
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.8e-34 150.2 83 83.1
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.2e-34 149.8 312 35.9
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.6e-29 133.7 81 76.5
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 6.2e-26 123.2 67 83.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.6e-24 117.9 65 83.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 5.1e-20 103.6 168 36.3
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 3.3e-19 100.9 129 41.9
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.3e-12 78.2 222 32.4
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.8e-10 71.2 229 32.3
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.2e-10 70.1 221 29.0


User provided reference genes

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