Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.5e-90 333.6 179 100.0
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 5.3e-72 274.6 223 72.2
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.9e-72 274.2 223 71.7
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.9e-72 274.2 223 71.7
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 9.0e-72 273.9 223 71.7
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 9.0e-72 273.9 223 71.7
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.6e-71 272.3 223 71.7
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 5.8e-71 271.2 223 71.3
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.3e-70 270.0 223 70.9
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.4e-70 267.3 231 69.7
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 9.3e-69 263.8 223 70.0
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 7.4e-66 254.2 223 68.2
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-61 240.4 180 76.7
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 7.4e-58 227.6 222 62.6
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 1.4e-56 223.4 222 59.9
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.5e-55 218.4 221 62.0
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 2.2e-54 216.1 223 59.2
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 2.1e-52 209.5 223 57.4
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.6e-52 208.4 229 59.4
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 7.9e-52 207.6 215 61.9
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.8e-51 206.5 219 58.0
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.8e-51 206.5 219 58.0
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 1.8e-51 206.5 217 57.6
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 8.7e-51 204.1 219 57.1
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 9.7e-50 200.7 223 54.3
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.6e-49 199.9 223 54.7
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 2.8e-49 199.1 225 56.4
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.8e-49 198.4 223 54.3
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 4.8e-49 198.4 223 55.6
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 6.3e-49 198.0 223 55.2
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 1.4e-48 196.8 223 54.3
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.1e-48 195.7 219 57.1
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 3.1e-48 195.7 223 54.7
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 6.9e-48 194.5 221 54.3
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 2.9e-46 189.1 223 52.5
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 6.5e-46 188.0 223 52.5
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 4.2e-45 185.3 220 52.3
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 4.2e-45 185.3 223 52.5
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 7.2e-45 184.5 220 50.9
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 7.2e-45 184.5 223 52.5
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.6e-44 183.3 224 51.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.6e-44 182.2 222 52.3
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.8e-43 179.9 220 51.8
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 3.9e-43 178.7 220 49.5
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 6.7e-43 177.9 220 49.1
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.5e-42 176.8 220 50.0
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.5e-42 176.0 220 49.5
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 5.7e-42 174.9 219 50.2
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 9.7e-42 174.1 223 51.6
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 2.2e-41 172.9 225 50.2
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 6.3e-41 171.4 221 51.1
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 6.3e-41 171.4 221 51.1
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.4e-40 170.2 223 48.0
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.4e-40 170.2 195 54.4
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 2.4e-40 169.5 226 50.4
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 3.1e-40 169.1 221 48.4
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 6.9e-40 167.9 226 50.0
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 1.2e-39 167.2 226 50.0
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 4.5e-39 165.2 221 48.4
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.0e-38 164.1 224 49.1
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.3e-38 163.7 221 48.0
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.7e-38 163.3 184 54.9
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 2.2e-38 162.9 219 48.9
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.1e-37 160.6 221 48.4
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 1.4e-37 160.2 223 47.1
FvH4_5g37879 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-37 159.8 87 100.0
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 1.9e-37 159.8 262 43.5
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 3.2e-37 159.1 220 47.3
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 3.6e-36 155.6 220 46.4
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 4.7e-36 155.2 148 58.8
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 6.1e-36 154.8 249 44.6
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 5.1e-35 151.8 220 45.0
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 5.1e-35 151.8 221 45.7
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 6.7e-35 151.4 213 46.9
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 8.8e-35 151.0 215 46.5
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.1e-34 150.6 220 45.9
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.1e-34 150.6 220 45.9
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 2.0e-34 149.8 184 50.0
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 2.0e-34 149.8 248 41.9
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.4e-34 148.7 218 46.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.4e-34 148.7 218 46.3
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.3e-33 147.1 219 45.2
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 3.7e-33 145.6 220 44.5
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 1.1e-32 144.1 227 44.1
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 4.1e-32 142.1 218 44.5
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 2.0e-31 139.8 219 42.9
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 2.6e-31 139.4 217 44.2
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 2.6e-31 139.4 206 43.7
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 2.6e-31 139.4 217 45.2
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.7e-30 136.7 222 44.1
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 2.2e-30 136.3 222 45.9
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 2.9e-30 136.0 152 53.3
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 3.8e-30 135.6 204 42.2
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 3.8e-30 135.6 232 42.2
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 5.0e-30 135.2 219 43.4
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 5.0e-30 135.2 219 43.4
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 8.5e-30 134.4 219 43.4
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 8.5e-30 134.4 217 42.9
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.5e-29 133.7 219 43.4
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 1.5e-29 133.7 219 43.4
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 4.2e-29 132.1 174 49.4
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 5.5e-29 131.7 243 41.6
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 9.4e-29 131.0 222 43.2
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 1.2e-28 130.6 224 42.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.7e-28 129.4 178 46.6
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 3.6e-28 129.0 221 43.9
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.0e-27 127.5 221 42.5
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 1.8e-27 126.7 223 44.4
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 3.9e-27 125.6 223 39.0
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 8.8e-27 124.4 192 46.4
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 8.8e-27 124.4 180 45.6
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 8.8e-27 124.4 202 44.1
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 1.5e-26 123.6 214 43.0
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 3.3e-26 122.5 213 40.8
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 5.7e-26 121.7 170 46.5
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 5.7e-26 121.7 170 46.5
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.7e-25 120.2 120 56.7
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 3.7e-25 119.0 223 39.9
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 3.7e-25 119.0 223 39.9
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 4.8e-25 118.6 137 52.6
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 6.3e-25 118.2 214 42.1
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.8e-24 116.7 173 45.7
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 4.1e-24 115.5 224 39.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 7.0e-24 114.8 116 53.4
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.0e-23 113.2 136 54.4
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.7e-22 110.2 260 36.9
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 3.8e-22 109.0 158 44.9
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.6e-20 103.6 169 45.0
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.8e-19 100.1 160 42.5
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 5.2e-19 98.6 91 61.5
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 7.5e-18 94.7 122 48.4
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 9.4e-13 77.8 110 43.6
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.6e-12 77.0 84 48.8
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.0e-11 72.4 81 49.4
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 2.6e-10 69.7 189 35.4
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 4.4e-10 68.9 69 60.9
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.9e-06 56.2 62 45.2
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 2.9e-06 56.2 110 32.7
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 3.8e-06 55.8 71 49.3
RcHm_v2.0_Chr5g0076521 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-06 55.5 28 92.9


User provided reference genes

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