Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 7.2e-219 763.8 450 100.0
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.2e-207 723.8 432 96.1
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 5.0e-196 688.0 510 81.4
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 7.1e-166 587.8 510 70.8
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.2e-159 566.2 508 70.1
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.6e-148 528.1 449 67.3
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.0e-128 463.4 297 82.8
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.1e-115 421.0 471 51.4
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.1e-81 308.1 517 39.8
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 8.6e-79 298.5 483 41.4
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 3.0e-76 290.0 505 38.6
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 1.3e-66 258.1 357 43.4
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 7.8e-64 248.8 503 35.2
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 1.4e-60 238.0 295 46.1
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.3e-60 237.3 337 43.0
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 3.1e-60 236.9 320 45.6
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 6.8e-60 235.7 339 43.4
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 5.8e-59 232.6 356 42.1
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 1.1e-57 228.4 365 41.4
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 2.5e-54 217.2 331 41.1
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 3.3e-54 216.9 303 43.9
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 1.6e-53 214.5 306 44.4
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 2.1e-53 214.2 388 38.7
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 4.7e-53 213.0 341 40.8
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 4.7e-53 213.0 405 37.8
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 6.2e-53 212.6 307 42.0
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 1.1e-52 211.8 387 37.7
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 5.2e-52 209.5 349 39.0
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 5.2e-52 209.5 359 39.0
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 1.5e-51 208.0 322 40.4
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 4.4e-51 206.5 356 37.6
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 1.7e-50 204.5 357 37.5
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 2.9e-50 203.8 358 37.2
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 1.4e-49 201.4 341 35.2
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 1.4e-49 201.4 357 37.3
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 1.9e-49 201.1 356 37.4
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 7.1e-49 199.1 422 33.2
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 9.2e-49 198.7 309 37.5
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.2e-48 198.4 354 38.4
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 6.0e-48 196.1 356 34.3
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 5.1e-47 193.0 339 36.3
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 4.3e-46 189.9 328 36.6
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 2.1e-45 187.6 359 34.3
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 6.2e-45 186.0 308 38.3
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 1.4e-44 184.9 305 37.7
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 2.2e-42 177.6 317 34.7
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 2.9e-42 177.2 304 37.2
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 2.9e-42 177.2 305 36.4
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 4.2e-41 173.3 308 37.3
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-39 168.3 340 33.2
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 3.0e-39 167.2 338 34.3
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 7.3e-38 162.5 179 50.8
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-36 158.3 340 33.8
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.8e-36 157.9 340 33.2
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 5.3e-36 156.4 343 31.5
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 6.9e-36 156.0 189 46.6
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 5.8e-35 152.9 370 30.0
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.2e-34 151.0 179 46.4
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.7e-31 141.4 230 38.3
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.3e-31 141.0 252 38.9
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 2.3e-31 141.0 283 35.0
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 8.7e-31 139.0 260 35.8
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.3e-29 135.2 390 29.7
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 2.1e-29 134.4 271 34.3
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.6e-29 133.7 180 41.7
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 6.2e-29 132.9 200 40.0
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 8.1e-29 132.5 220 38.2
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.4e-28 131.7 202 41.1
FAN18G3583 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.8e-28 131.3 89 79.8
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 1.5e-27 128.3 236 35.6
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.0e-27 127.9 298 33.6
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 2.6e-27 127.5 210 39.5
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 7.6e-27 125.9 157 43.9
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 9.9e-27 125.6 83 71.1
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 1.3e-26 125.2 256 34.0
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 1.7e-26 124.8 319 30.4
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 2.4e-25 120.9 106 58.5
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 1.2e-24 118.6 280 32.9
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.0e-24 116.3 242 31.8
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-21 108.6 109 52.3
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 4.0e-20 103.6 218 31.2
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 3.4e-19 100.5 95 51.6
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-18 98.2 86 55.8
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 1.7e-18 98.2 168 36.9
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-17 95.5 125 43.2
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.4e-17 95.1 177 34.5
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 2.1e-16 91.3 86 55.8
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 3.0e-15 87.4 234 29.1
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.3e-14 83.6 166 34.3
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-13 81.6 76 56.6
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 2.1e-13 81.3 76 56.6
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 2.8e-13 80.9 90 47.8
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-12 78.6 100 41.0
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-12 78.6 100 41.0
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.8e-12 78.2 154 35.1
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 2.4e-12 77.8 97 43.3
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.4e-12 77.8 358 24.0
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 3.1e-12 77.4 240 29.6
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 9.0e-12 75.9 90 42.2
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.0e-12 75.9 100 40.0
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 9.0e-12 75.9 90 46.7
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-11 74.7 81 45.7
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-11 74.7 170 31.8
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-11 74.7 100 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 4.5e-11 73.6 201 29.4
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 4.5e-11 73.6 90 42.2
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 4.5e-11 73.6 79 46.8
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 5.8e-11 73.2 74 47.3
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 1.3e-10 72.0 88 44.3
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.7e-10 71.6 75 48.0
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 2.9e-10 70.9 75 46.7
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 1.1e-09 68.9 74 45.9
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 1.1e-09 68.9 74 45.9
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 2.5e-09 67.8 124 33.1
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 2.5e-09 67.8 87 46.0
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 7.1e-09 66.2 69 46.4
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.2e-08 65.5 74 44.6
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 1.0e-07 62.4 70 45.7
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-06 58.9 78 42.3
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 1.1e-06 58.9 47 48.9
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 1.9e-06 58.2 63 46.0


User provided reference genes

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