Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.3e-143 512.3 276 100.0
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 1.6e-96 356.7 277 78.0
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 5.1e-74 282.0 218 76.1
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 2.2e-53 213.4 222 67.6
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 5.0e-37 159.1 271 49.1
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 4.4e-33 146.0 287 46.3
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 2.6e-25 120.2 288 39.2
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 9.7e-25 118.2 259 43.2
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 8.2e-24 115.2 290 39.3
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.9e-20 104.0 293 37.9
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 7.2e-20 102.1 247 41.3
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 8.0e-19 98.6 262 37.8
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 1.8e-18 97.4 201 42.8
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 3.0e-18 96.7 225 40.9
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 3.3e-17 93.2 194 40.2
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 7.5e-17 92.0 291 35.7
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 9.7e-17 91.7 245 40.0
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 1.3e-16 91.3 228 38.6
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.7e-16 90.9 255 40.0
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 2.2e-16 90.5 290 35.2
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 3.7e-16 89.7 237 42.2
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 8.3e-16 88.6 286 35.0
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 8.3e-16 88.6 190 42.1
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 1.4e-15 87.8 246 36.6
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.8e-15 87.4 237 41.8
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 4.1e-15 86.3 277 35.7
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 4.1e-15 86.3 183 39.9
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 7.0e-15 85.5 205 39.5
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 9.1e-15 85.1 158 38.6
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 1.2e-14 84.7 215 38.6
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 1.2e-14 84.7 244 40.2
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 1.6e-14 84.3 202 35.6
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 2.7e-14 83.6 239 38.5
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 2.7e-14 83.6 243 38.3
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.7e-14 83.6 244 33.6
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 2.7e-14 83.6 192 42.7
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 2.7e-14 83.6 249 37.3
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 2.7e-14 83.6 193 37.8
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 2.7e-14 83.6 241 33.2
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 4.5e-14 82.8 154 42.2
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 4.5e-14 82.8 213 37.1
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 1.3e-13 81.3 239 37.2
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 1.3e-13 81.3 255 38.8
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 2.2e-13 80.5 243 39.1
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 2.2e-13 80.5 250 39.6
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 8.5e-13 78.6 287 35.2
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.1e-12 78.2 301 35.2
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 1.1e-12 78.2 194 36.6
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 4.2e-12 76.3 284 32.0
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 5.5e-12 75.9 161 40.4
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 5.5e-12 75.9 216 32.9
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 5.5e-12 75.9 195 39.0
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 7.2e-12 75.5 245 38.4
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 9.4e-12 75.1 155 44.5
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 9.4e-12 75.1 300 31.7
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 1.2e-11 74.7 214 35.0
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 1.6e-11 74.3 182 37.4
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 2.1e-11 73.9 202 35.6
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 2.1e-11 73.9 205 35.6
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 2.1e-11 73.9 124 45.2
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 2.1e-11 73.9 212 38.7
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 6.1e-11 72.4 196 37.2
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 8.0e-11 72.0 186 39.8
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 8.0e-11 72.0 209 34.4
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 8.0e-11 72.0 228 36.0
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 8.0e-11 72.0 233 35.6
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 1.0e-10 71.6 210 33.8
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 1.0e-10 71.6 219 35.6
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 1.0e-10 71.6 219 35.2
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 1.4e-10 71.2 210 33.8
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.4e-10 71.2 202 35.6
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 3.0e-10 70.1 197 33.5
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 4.0e-10 69.7 206 36.4
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 4.0e-10 69.7 188 37.8
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 4.0e-10 69.7 204 37.7
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 6.8e-10 68.9 233 36.9
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 1.2e-09 68.2 227 35.7
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 1.5e-09 67.8 159 35.2
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 1.5e-09 67.8 285 29.5
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 2.6e-09 67.0 144 36.1
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 3.4e-09 66.6 111 53.2
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 5.7e-09 65.9 214 36.4
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 9.8e-09 65.1 318 27.4
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 1.3e-08 64.7 169 43.2
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 1.7e-08 64.3 217 34.1
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 1.7e-08 64.3 227 36.6
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 2.2e-08 63.9 162 43.2
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 2.2e-08 63.9 195 40.5
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 3.7e-08 63.2 239 35.6
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 3.7e-08 63.2 278 30.2
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 4.8e-08 62.8 159 34.6
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 4.8e-08 62.8 142 40.8
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 4.8e-08 62.8 228 36.4
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 1.8e-07 60.8 201 33.3
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 1.8e-07 60.8 77 62.3
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.8e-07 60.8 283 32.2
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 4.1e-07 59.7 194 36.1
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 7.0e-07 58.9 279 32.3
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 1.2e-06 58.2 222 34.2
Haze_16651 Corylus avellana HOM05D005915 ORTHO05D007239 1.6e-06 57.8 129 42.6
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 1.6e-06 57.8 104 40.4
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 4.5e-06 56.2 132 45.5


User provided reference genes

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