Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.7e-81 305.8 145 100.0
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 6.4e-76 287.3 168 84.5
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 7.0e-75 283.9 168 83.3
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 2.3e-73 278.9 144 90.3
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.1e-67 260.0 144 84.7
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 2.4e-67 258.8 144 83.3
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 3.2e-67 258.5 145 83.4
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.3e-65 253.1 144 80.6
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 7.3e-64 247.3 144 79.2
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 3.1e-62 241.9 144 76.4
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 8.9e-62 240.4 144 75.7
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 2.6e-61 238.8 144 74.3
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 2.6e-61 238.8 144 74.3
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 9.9e-61 236.9 144 75.0
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 2.2e-60 235.7 144 75.0
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 2.9e-60 235.3 144 75.0
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 3.7e-60 235.0 136 80.9
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 3.7e-60 235.0 144 73.6
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 3.7e-60 235.0 143 74.8
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 3.7e-60 235.0 144 73.6
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 4.9e-60 234.6 144 74.3
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 4.9e-60 234.6 144 74.3
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 8.3e-60 233.8 144 74.3
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 8.3e-60 233.8 144 73.6
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.1e-59 233.4 144 70.8
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.1e-59 233.4 144 74.3
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 7.1e-59 230.7 144 72.9
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 7.1e-59 230.7 144 72.9
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 9.2e-59 230.3 144 72.9
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 9.2e-59 230.3 144 73.6
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 1.6e-58 229.6 144 72.9
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.6e-58 228.0 145 72.4
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 6.0e-58 227.6 144 69.4
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.3e-57 226.5 144 71.5
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 1.3e-57 226.5 210 57.1
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 1.3e-57 226.5 144 76.4
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.7e-57 226.1 145 72.4
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 2.3e-57 225.7 144 69.4
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 3.9e-57 224.9 144 71.5
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 8.6e-57 223.8 144 73.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 1.1e-56 223.4 144 69.4
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 1.1e-56 223.4 144 69.4
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 1.1e-56 223.4 164 65.9
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 1.1e-56 223.4 150 72.0
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.5e-56 223.0 145 71.0
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.5e-56 223.0 145 71.0
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 1.9e-56 222.6 144 70.1
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 4.3e-56 221.5 144 68.8
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 5.6e-56 221.1 144 70.8
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 9.5e-56 220.3 144 70.1
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 9.5e-56 220.3 144 73.6
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 1.2e-55 219.9 144 69.4
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 1.6e-55 219.5 144 69.4
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.6e-55 219.5 144 69.4
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 2.1e-55 219.2 144 70.1
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.1e-55 219.2 144 70.1
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 2.1e-55 219.2 144 70.8
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 3.6e-55 218.4 144 68.8
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 3.6e-55 218.4 144 72.9
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 3.6e-55 218.4 144 71.5
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 4.7e-55 218.0 144 66.7
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 6.2e-55 217.6 144 70.8
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.1e-54 216.9 144 67.4
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 1.1e-54 216.9 145 68.3
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 1.8e-54 216.1 144 68.8
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.4e-54 215.7 144 68.8
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 4.0e-54 214.9 149 69.8
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 6.8e-54 214.2 167 64.1
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 1.2e-53 213.4 145 69.7
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.2e-53 213.4 144 66.7
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.5e-53 213.0 145 68.3
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.5e-53 213.0 145 66.2
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.0e-53 212.6 147 67.3
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 2.6e-53 212.2 144 67.4
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 2.6e-53 212.2 144 67.4
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 2.6e-53 212.2 182 58.8
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 4.4e-53 211.5 144 67.4
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 4.4e-53 211.5 144 69.4
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 4.4e-53 211.5 144 69.4
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 4.4e-53 211.5 144 65.3
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 5.8e-53 211.1 144 65.3
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 8.4e-52 207.2 144 69.4
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 2.4e-51 205.7 124 75.0
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 3.5e-50 201.8 144 62.5
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 3.5e-50 201.8 134 69.4
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 1.3e-49 199.9 161 60.9
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 3.0e-49 198.7 144 63.2
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 3.0e-49 198.7 143 60.8
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 6.6e-49 197.6 172 56.4
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 1.5e-48 196.4 145 62.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.9e-48 196.1 127 68.5
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.4e-46 189.9 120 70.8
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 5.8e-45 184.5 143 54.5
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 6.0e-42 174.5 107 80.4
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 1.8e-38 162.9 100 75.0
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 8.4e-36 154.1 119 53.8
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 1.5e-32 143.3 90 72.2
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 5.6e-32 141.4 144 50.7
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 9.0e-30 134.0 100 63.0
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 7.1e-27 124.4 98 54.1
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.2e-26 123.6 82 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 7.9e-26 120.9 138 36.2
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 7.6e-21 104.4 62 75.8
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 7.6e-21 104.4 151 35.8
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 1.1e-19 100.5 123 48.8
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.4e-19 100.1 98 55.1
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.2e-18 97.1 45 95.6
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.2e-18 97.1 63 71.4
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 6.0e-18 94.7 62 71.0
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.8e-17 93.2 77 51.9
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 7.4e-16 87.8 138 29.0
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 4.5e-13 78.6 67 50.7
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 8.5e-12 74.3 62 59.7
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.4e-09 67.0 38 78.9
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 6.3e-07 58.2 47 46.8


User provided reference genes

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