Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 0.0e+00 1472.6 793 100.0
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 0.0e+00 1209.9 793 86.6
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 0.0e+00 1124.4 794 81.2
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 4.9e-295 1017.7 731 81.7
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 7.6e-256 887.5 799 66.2
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 5.4e-254 881.3 797 66.1
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 3.5e-245 852.0 804 63.1
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.5e-245 852.0 562 86.3
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 7.9e-245 850.9 798 64.2
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 1.5e-243 846.7 796 64.1
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 7.4e-243 844.3 797 63.7
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 9.6e-243 844.0 884 59.4
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 8.2e-242 840.9 798 63.4
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 1.1e-241 840.5 797 63.6
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.3e-239 833.6 798 63.5
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 3.3e-235 818.9 767 63.6
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 7.4e-235 817.8 743 66.8
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 4.1e-233 812.0 798 61.4
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.7e-231 806.6 794 62.0
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.9e-230 803.1 800 61.4
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 3.2e-230 802.4 803 61.3
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.3e-228 796.2 795 61.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 3.0e-228 795.8 766 61.9
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 6.7e-228 794.7 823 59.3
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.8e-226 789.3 803 61.1
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 4.8e-226 788.5 799 60.3
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 1.1e-225 787.3 803 60.9
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.5e-224 783.5 801 59.9
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.9e-222 776.5 793 58.6
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 2.5e-222 776.2 800 60.4
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 2.1e-221 773.1 793 58.5
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 3.6e-221 772.3 796 59.0
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 1.0e-220 770.8 795 59.7
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 2.3e-220 769.6 800 59.2
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 5.1e-220 768.5 799 59.4
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 2.8e-218 762.7 792 57.7
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.8e-218 762.7 797 58.5
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 3.7e-218 762.3 798 59.5
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 6.3e-218 761.5 795 59.5
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 8.2e-218 761.1 802 58.1
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 1.2e-216 757.3 795 57.2
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 3.5e-216 755.7 794 58.8
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 2.2e-215 753.1 795 56.9
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 2.9e-215 752.7 793 58.6
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 3.8e-215 752.3 796 56.5
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 3.8e-215 752.3 792 57.2
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 5.0e-215 751.9 798 58.0
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 5.5e-214 748.4 795 57.2
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 7.2e-214 748.0 795 58.1
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 1.6e-213 746.9 775 58.7
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 4.7e-213 745.3 831 57.5
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.0e-212 744.2 794 57.4
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.4e-212 743.8 796 56.3
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.3e-210 737.3 794 57.7
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.8e-210 736.1 813 55.8
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 4.8e-210 735.3 794 56.7
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 9.1e-209 731.1 794 56.7
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.7e-207 726.9 770 58.4
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 3.8e-207 725.7 796 55.4
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 6.5e-207 724.9 792 56.3
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 1.5e-206 723.8 797 56.2
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.5e-206 723.8 803 55.3
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 1.9e-206 723.4 782 56.1
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 2.5e-206 723.0 800 55.2
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 2.7e-205 719.5 795 56.7
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 8.8e-204 714.5 794 56.2
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 8.8e-204 714.5 794 56.2
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.7e-202 710.3 795 55.1
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 3.7e-202 709.1 798 56.1
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 1.6e-200 703.7 793 55.1
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.2e-199 699.9 781 55.6
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 5.0e-199 698.7 765 57.9
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.7e-197 693.0 800 55.0
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 7.0e-193 678.3 804 52.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 3.8e-191 672.5 803 55.4
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 9.5e-190 667.9 767 53.7
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 8.9e-188 661.4 793 52.5
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 7.5e-187 658.3 798 54.3
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 3.7e-186 656.0 799 54.7
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 2.0e-184 650.2 831 50.4
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 2.0e-184 650.2 790 53.2
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.2e-179 634.4 765 52.7
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 2.2e-178 630.2 816 50.0
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 8.3e-178 628.2 798 51.4
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 3.2e-177 626.3 767 51.6
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 9.5e-174 614.8 743 52.1
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 8.0e-173 611.7 612 60.0
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 1.2e-165 587.8 802 47.6
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.2e-160 571.2 796 47.7
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 2.9e-154 550.1 801 46.1
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 1.9e-150 537.3 745 48.1
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.3e-138 498.0 796 43.3
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 8.4e-138 495.4 601 53.7
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 2.5e-134 483.8 435 64.6
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.0e-128 462.6 435 62.8
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 8.7e-127 458.8 649 47.5
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 1.4e-113 414.8 420 60.5
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.0e-103 382.1 389 58.1
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 2.6e-102 377.5 424 56.6
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 3.1e-92 344.0 360 59.4
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 2.5e-81 307.8 456 46.9
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 8.0e-80 302.8 514 44.6
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 5.7e-78 296.6 382 49.5
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 3.7e-77 293.9 336 54.5
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 5.9e-75 286.6 282 58.5
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 1.4e-68 265.4 673 34.6
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.2e-67 262.3 778 29.9
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-59 235.7 403 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.9e-57 228.4 732 28.4
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 1.8e-55 221.9 737 27.7
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.2e-52 211.1 835 26.8
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 3.5e-51 207.6 786 26.8
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 6.2e-32 143.7 142 60.6
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.6e-26 123.6 84 71.4
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 4.3e-25 120.9 109 63.3
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 1.3e-21 109.4 191 42.4
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.7e-18 96.7 124 46.0
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.3e-17 94.7 154 40.3
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 4.3e-17 94.4 71 67.6
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 5.3e-15 87.4 98 51.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-14 86.3 55 80.0
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 2.6e-14 85.1 104 51.9
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 2.6e-14 85.1 106 50.0
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 3.5e-11 74.7 62 62.9
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 7.9e-11 73.6 86 51.2
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.0e-10 73.2 91 49.5
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.3e-10 72.8 119 43.7
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 4.8e-08 64.3 41 73.2
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 9.0e-07 60.1 227 30.0
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 1.2e-06 59.7 530 21.3
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 3.4e-06 58.2 87 33.3
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 3.4e-06 58.2 41 70.7


User provided reference genes

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