Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.1e-45 185.3 88 100.0
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.1e-45 185.3 88 100.0
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 6.0e-45 183.7 88 98.9
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.7e-44 182.2 88 98.9
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.9e-44 181.0 88 97.7
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 6.4e-39 163.7 88 89.8
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.1e-22 109.8 85 67.1
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 5.5e-22 107.5 85 65.9
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.7e-15 85.9 84 54.8
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.4e-14 82.8 81 55.6
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 7.2e-14 80.5 74 54.1
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.6e-13 78.2 83 54.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 6.1e-13 77.4 83 54.2
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 7.9e-13 77.0 85 55.3
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 5.1e-12 74.3 78 52.6
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 8.8e-12 73.6 73 52.1
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.5e-11 72.8 80 55.0
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 1.5e-11 72.8 90 51.1
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 2.0e-11 72.4 79 45.6
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.5e-11 72.0 76 50.0
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.5e-11 72.0 83 50.6
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 3.3e-11 71.6 84 46.4
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 4.3e-11 71.2 74 51.4
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 5.7e-11 70.9 75 53.3
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 5.7e-11 70.9 88 50.0
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 5.7e-11 70.9 76 50.0
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 5.7e-11 70.9 74 50.0
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 1.3e-10 69.7 75 52.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.7e-10 69.3 80 51.2
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.2e-10 68.9 80 50.0
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.2e-10 68.9 80 50.0
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 2.2e-10 68.9 92 43.5
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 2.2e-10 68.9 89 44.9
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 2.8e-10 68.6 89 48.3
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.7e-10 68.2 79 49.4
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.7e-10 68.2 79 49.4
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 3.7e-10 68.2 79 48.1
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 3.7e-10 68.2 74 50.0
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 6.3e-10 67.4 84 48.8
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 6.3e-10 67.4 83 49.4
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 8.2e-10 67.0 75 46.7
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.8e-09 65.9 79 46.8
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 2.4e-09 65.5 80 47.5
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.4e-09 65.5 79 44.3
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 2.4e-09 65.5 90 46.7
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 9.1e-09 63.5 84 46.4
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.5e-08 62.8 83 43.4
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 2.0e-08 62.4 86 44.2
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 2.6e-08 62.0 83 47.0
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 2.6e-08 62.0 74 45.9
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 5.9e-08 60.8 77 45.5
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 7.7e-08 60.5 78 44.9
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 7.7e-08 60.5 80 42.5
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 1.0e-07 60.1 70 47.1
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.0e-07 60.1 70 47.1
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.0e-07 60.1 70 47.1
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 1.0e-07 60.1 70 47.1
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.0e-07 60.1 70 47.1
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 1.0e-07 60.1 79 43.0
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.7e-07 59.3 76 51.3
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.7e-07 59.3 79 41.8
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 2.2e-07 58.9 70 47.1
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 2.2e-07 58.9 70 47.1
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.2e-07 58.9 45 64.4
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 2.2e-07 58.9 74 48.6
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 2.2e-07 58.9 79 41.8
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.8e-07 58.2 87 43.7
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 6.5e-07 57.4 76 47.4
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.5e-07 57.4 87 43.7
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 6.5e-07 57.4 87 43.7
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 6.5e-07 57.4 79 43.0
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.1e-06 56.6 44 61.4
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.1e-06 56.6 88 42.0
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 1.9e-06 55.8 76 47.4
MSTRG.12158 Avicennia marina HOM05D006292 ORTHO05D006110 1.9e-06 55.8 79 44.3
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.9e-06 55.8 68 44.1
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.9e-06 55.8 68 44.1
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 1.9e-06 55.8 77 49.4
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 2.5e-06 55.5 80 42.5
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 3.2e-06 55.1 80 43.8
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 3.2e-06 55.1 44 59.1
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 4.2e-06 54.7 43 53.5
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 4.2e-06 54.7 78 41.0
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 4.2e-06 54.7 80 43.8
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 4.2e-06 54.7 83 38.6
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 4.2e-06 54.7 76 47.4
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 4.2e-06 54.7 81 40.7
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 5.5e-06 54.3 76 47.4
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 5.5e-06 54.3 86 41.9
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 5.5e-06 54.3 95 36.8
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 5.5e-06 54.3 80 40.0
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 5.5e-06 54.3 80 40.0
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 7.2e-06 53.9 68 42.6
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 7.2e-06 53.9 68 42.6
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 7.2e-06 53.9 68 42.6
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 7.2e-06 53.9 43 62.8
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 9.4e-06 53.5 70 42.9
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 9.4e-06 53.5 88 36.4
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 9.4e-06 53.5 88 38.6


User provided reference genes

Program Settings