Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.1e-72 276.6 144 100.0
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 1.0e-70 270.0 144 96.5
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.3e-70 268.9 144 96.5
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 9.8e-69 263.5 144 95.1
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.4e-62 243.0 141 90.8
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 2.1e-42 176.0 148 68.9
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 7.8e-42 174.1 146 70.5
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 3.1e-38 162.2 138 69.6
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 7.1e-35 151.0 146 57.5
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 3.5e-34 148.7 140 59.3
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 6.0e-34 147.9 139 61.2
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 2.3e-33 146.0 141 62.4
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 3.9e-33 145.2 145 59.3
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 5.1e-33 144.8 147 54.4
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 1.1e-32 143.7 143 55.2
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 1.5e-32 143.3 140 60.0
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 4.3e-32 141.7 141 57.4
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 5.6e-32 141.4 139 61.2
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 1.2e-31 140.2 140 59.3
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.2e-31 140.2 146 54.8
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 1.6e-31 139.8 141 56.7
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 2.1e-31 139.4 138 58.0
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 4.7e-31 138.3 143 58.7
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 8.1e-31 137.5 138 57.2
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.1e-30 137.1 143 55.2
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 3.1e-30 135.6 143 55.9
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 6.8e-30 134.4 131 56.5
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 6.8e-30 134.4 138 55.8
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.2e-29 133.7 139 55.4
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 1.2e-29 133.7 138 54.3
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 1.5e-29 133.3 141 58.2
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 2.0e-29 132.9 153 52.9
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 2.0e-29 132.9 135 57.0
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 3.4e-29 132.1 151 54.3
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 7.6e-29 131.0 129 58.9
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 7.6e-29 131.0 148 56.8
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 9.9e-29 130.6 146 53.4
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 1.7e-28 129.8 151 52.3
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 2.2e-28 129.4 154 51.3
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 2.2e-28 129.4 150 50.0
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 2.9e-28 129.0 151 52.3
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 2.9e-28 129.0 151 52.3
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 3.8e-28 128.6 136 55.9
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 6.4e-28 127.9 137 54.0
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 8.4e-28 127.5 149 53.7
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 8.4e-28 127.5 137 56.2
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 1.4e-27 126.7 150 49.3
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 1.4e-27 126.7 145 53.1
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 2.4e-27 125.9 149 50.3
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.2e-26 123.6 143 54.5
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.1e-26 122.9 152 50.7
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 6.0e-26 121.3 141 52.5
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 1.0e-25 120.6 155 50.3
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 2.3e-25 119.4 128 55.5
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.3e-25 119.4 146 51.4
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 3.0e-25 119.0 139 49.6
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 3.9e-25 118.6 137 49.6
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 3.9e-25 118.6 133 52.6
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 5.1e-25 118.2 130 53.8
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 6.6e-25 117.9 133 50.4
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 8.7e-25 117.5 144 51.4
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 1.1e-24 117.1 152 52.0
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 1.9e-24 116.3 151 45.7
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.5e-24 115.9 118 54.2
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 2.5e-24 115.9 131 52.7
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 9.6e-24 114.0 145 49.7
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 1.6e-23 113.2 144 50.0
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 3.6e-23 112.1 147 48.3
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 2.4e-22 109.4 141 52.5
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 6.9e-22 107.8 141 48.9
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 9.0e-22 107.5 138 47.1
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 9.0e-22 107.5 139 50.4
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.5e-21 106.7 106 56.6
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 2.6e-21 105.9 138 50.7
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 4.4e-21 105.1 116 50.0
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 5.8e-21 104.8 121 53.7
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 9.9e-21 104.0 127 51.2
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 9.9e-21 104.0 121 53.7
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 2.9e-20 102.4 130 46.9
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 5.4e-19 98.2 120 51.7
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 5.4e-19 98.2 109 54.1
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 2.1e-18 96.3 103 56.3
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 3.5e-18 95.5 148 42.6
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.7e-17 93.2 147 41.5
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.7e-17 93.2 147 41.5
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 2.3e-17 92.8 127 44.9
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 3.9e-17 92.0 125 45.6
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 5.1e-17 91.7 72 61.1
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 5.1e-17 91.7 119 48.7
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 8.7e-17 90.9 126 45.2
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 1.1e-16 90.5 128 44.5
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 4.3e-16 88.6 130 48.5
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 9.6e-16 87.4 133 39.8
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 9.6e-16 87.4 122 42.6
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 1.3e-15 87.0 122 42.6
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 1.3e-15 87.0 122 42.6
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 1.6e-15 86.7 132 45.5
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 1.6e-15 86.7 125 41.6
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 2.8e-15 85.9 122 42.6
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 1.1e-14 84.0 143 42.7
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 2.4e-14 82.8 81 60.5
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 6.9e-14 81.3 125 38.4
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 6.9e-14 81.3 129 38.0
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 4.5e-13 78.6 125 36.8
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 4.5e-13 78.6 134 41.0
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.3e-12 77.0 80 51.2
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 1.7e-12 76.6 127 40.2
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 1.4e-11 73.6 172 36.0
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 3.3e-08 62.4 94 43.6
Sed0006942 Sechium edule HOM05D007505 ORTHO05D009476 2.8e-07 59.3 128 43.0
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 1.4e-06 57.0 113 36.3


User provided reference genes

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