Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.5e-130 469.5 247 100.0
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.2e-128 461.5 247 98.0
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.1e-127 459.1 246 98.0
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 2.7e-127 458.8 247 93.9
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.7e-127 458.8 247 93.9
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.9e-127 457.2 247 93.9
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.9e-97 359.0 247 82.2
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 7.0e-91 337.8 253 70.4
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 4.0e-78 295.4 248 61.7
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.4e-75 287.0 247 61.5
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.6e-74 283.5 252 64.7
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 1.6e-74 283.5 247 60.3
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 4.6e-74 282.0 249 61.0
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.3e-73 280.4 244 59.8
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.3e-73 280.4 248 60.5
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 3.9e-73 278.9 243 61.7
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 8.6e-73 277.7 247 57.9
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 3.3e-72 275.8 249 59.4
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 2.8e-71 272.7 244 59.4
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 2.8e-71 272.7 253 60.1
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.8e-70 270.0 246 58.1
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 4.0e-70 268.9 243 57.2
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 4.0e-70 268.9 243 57.2
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 4.0e-70 268.9 247 59.5
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 6.8e-70 268.1 245 60.0
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 6.8e-70 268.1 243 60.1
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.2e-69 267.3 243 58.8
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.5e-69 266.9 247 56.3
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 2.6e-69 266.2 241 56.4
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 2.6e-69 266.2 246 56.9
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 5.8e-69 265.0 246 54.9
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 2.9e-68 262.7 244 59.8
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 4.9e-68 261.9 248 57.3
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 6.4e-68 261.5 245 57.6
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.1e-67 260.8 248 57.3
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 3.2e-67 259.2 248 56.0
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 7.0e-67 258.1 249 53.8
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 9.2e-67 257.7 248 55.6
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 2.7e-66 256.1 245 56.3
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 7.8e-66 254.6 243 57.2
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.7e-65 253.4 188 66.5
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 2.3e-65 253.1 244 56.6
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 3.0e-65 252.7 248 57.7
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 3.0e-65 252.7 242 56.6
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 3.9e-65 252.3 244 56.1
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 6.6e-65 251.5 245 56.3
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 6.6e-65 251.5 242 53.3
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.5e-64 250.4 244 55.7
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.9e-64 250.0 239 57.7
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 1.9e-64 250.0 192 67.2
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 4.3e-64 248.8 249 53.4
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 5.6e-64 248.4 247 54.3
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 9.5e-64 247.7 240 55.8
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 6.2e-63 245.0 242 55.4
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 8.9e-62 241.1 236 55.5
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 1.2e-61 240.7 196 64.3
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.5e-61 240.4 245 53.9
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 2.0e-61 240.0 246 53.3
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 2.6e-61 239.6 246 53.3
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 2.6e-61 239.6 250 57.6
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 3.4e-61 239.2 249 57.0
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 4.4e-61 238.8 244 56.1
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 4.4e-61 238.8 249 54.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.4e-61 238.8 252 52.4
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 5.8e-61 238.4 254 55.5
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 9.8e-61 237.7 257 53.7
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 9.8e-61 237.7 244 53.3
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 6.4e-60 235.0 248 54.8
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 8.3e-60 234.6 252 54.4
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 3.2e-59 232.6 243 53.5
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 5.4e-59 231.9 240 58.8
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 7.1e-59 231.5 246 54.1
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.2e-58 230.7 244 53.3
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.0e-57 227.6 230 54.3
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.3e-57 227.3 236 55.9
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 8.6e-57 224.6 240 55.0
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.5e-56 223.8 251 50.2
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.1e-54 217.6 251 56.2
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 3.4e-53 212.6 216 54.2
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 9.9e-53 211.1 231 53.2
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 9.9e-53 211.1 263 48.7
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 3.7e-52 209.1 248 49.6
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.7e-52 209.1 224 50.0
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 4.9e-52 208.8 263 49.4
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 5.4e-51 205.3 215 50.2
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.6e-50 203.8 192 55.7
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 3.5e-50 202.6 186 57.5
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 7.8e-50 201.4 250 48.8
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.5e-48 196.4 242 47.1
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 5.6e-48 195.3 223 51.1
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.6e-47 192.6 133 68.4
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 1.1e-46 191.0 247 45.7
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.4e-46 190.7 217 49.3
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 6.0e-42 175.3 247 43.3
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 5.3e-38 162.2 190 45.8
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.5e-37 160.6 196 42.3
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 1.1e-35 154.5 204 40.2
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 7.1e-35 151.8 194 45.4
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 4.8e-31 139.0 202 42.6
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 3.4e-29 132.9 250 39.2
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.6e-26 124.0 171 48.0
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.6e-26 124.0 171 48.0
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 3.5e-26 122.9 171 47.4
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 4.3e-24 115.9 140 49.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.9e-19 100.5 140 43.6
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 1.6e-18 97.4 238 37.8
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 1.6e-18 97.4 238 37.8
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 1.6e-18 97.4 142 45.8
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.0e-17 94.7 129 45.0
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.0e-17 94.7 147 42.2
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 1.3e-17 94.4 106 50.9
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.3e-17 94.4 132 42.4
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 5.1e-17 92.4 148 43.2
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 7.4e-16 88.6 147 40.1
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 7.4e-16 88.6 143 45.5
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 9.6e-16 88.2 144 39.6
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.6e-15 87.4 145 42.8
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.8e-15 86.7 143 37.8
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 8.2e-15 85.1 128 43.0
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 4.1e-14 82.8 145 40.0
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.2e-13 81.3 123 43.9
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 2.0e-13 80.5 131 39.7
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.7e-12 77.4 150 38.0
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.8e-09 67.4 65 52.3
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 2.4e-06 57.0 54 59.3


User provided reference genes

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