Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 0.0e+00 1120.5 569 100.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.2e-155 552.7 418 73.0
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.1e-114 415.6 326 70.6
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.0e-104 384.0 336 64.3
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.7e-98 362.8 340 60.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.1e-91 341.7 343 59.2
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.3e-87 328.2 345 57.7
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 8.6e-84 315.5 196 85.2
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.6e-82 311.2 342 53.8
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-81 308.1 336 55.1
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.8e-79 300.4 336 53.6
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.8e-73 281.2 338 50.9
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 3.0e-73 280.4 344 51.7
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.3e-71 275.0 333 50.8
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.7e-71 274.6 333 51.1
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.6e-69 268.1 362 47.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 3.9e-68 263.5 346 50.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 2.5e-67 260.8 340 47.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.8e-66 257.3 333 50.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.0e-66 255.8 333 50.2
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 5.2e-65 253.1 333 47.7
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.2e-64 251.9 334 51.5
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 3.4e-64 250.4 338 47.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.8e-64 249.6 340 47.4
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.4e-62 245.0 323 49.2
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.2e-62 243.8 304 50.0
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.4e-62 243.0 336 48.5
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 7.0e-62 242.7 339 45.7
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.2e-61 241.9 339 48.1
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 2.7e-61 240.7 301 48.2
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 4.6e-61 240.0 330 47.6
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 6.0e-61 239.6 342 47.4
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 3.9e-60 236.9 328 46.3
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 3.9e-60 236.9 326 46.0
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.9e-60 236.9 349 47.9
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 5.1e-60 236.5 337 49.0
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.1e-60 236.5 258 51.9
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 6.6e-60 236.1 339 46.6
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-59 235.3 327 46.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.1e-59 235.3 340 45.6
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.3e-59 233.4 326 45.7
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 5.6e-59 233.0 325 47.1
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 5.6e-59 233.0 325 47.1
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 7.3e-59 232.6 336 49.1
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 9.5e-59 232.3 315 47.0
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 9.5e-59 232.3 315 47.0
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.8e-58 230.7 324 45.7
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 2.8e-58 230.7 342 44.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 6.2e-58 229.6 316 44.3
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 6.2e-58 229.6 316 44.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.2e-58 229.6 323 46.1
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.4e-57 228.4 343 45.2
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 3.1e-57 227.3 315 46.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 5.2e-57 226.5 325 45.8
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 4.4e-56 223.4 317 46.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 7.5e-56 222.6 178 68.0
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 2.2e-55 221.1 333 46.2
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.9e-55 220.7 367 42.0
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 6.4e-55 219.5 338 46.2
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 8.3e-55 219.2 331 45.0
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.4e-54 217.6 306 45.4
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 3.2e-54 217.2 333 44.4
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 5.4e-54 216.5 317 44.5
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 9.2e-54 215.7 304 45.7
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.2e-53 215.3 336 44.9
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.2e-53 215.3 207 56.0
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.6e-53 214.9 336 43.5
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 6.0e-53 213.0 362 43.4
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 3.9e-52 210.3 300 44.0
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.1e-51 208.8 365 40.3
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.5e-51 208.4 314 44.3
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 4.3e-51 206.8 223 52.0
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 7.3e-51 206.1 235 50.2
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.1e-50 204.5 329 43.5
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 4.7e-50 203.4 332 41.9
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 8.1e-50 202.6 336 42.6
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 8.1e-50 202.6 344 42.7
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.1e-49 202.2 334 43.7
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.0e-49 200.3 348 41.4
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.6e-48 197.6 234 50.9
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 7.6e-48 196.1 199 52.8
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.9e-47 194.1 345 42.3
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 8.4e-47 192.6 202 53.5
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.4e-46 191.0 270 44.4
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 3.2e-46 190.7 335 39.7
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.1e-45 188.0 306 42.8
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.1e-45 188.0 351 41.6
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 4.6e-45 186.8 328 41.2
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-44 185.3 328 41.2
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-44 184.9 222 45.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.7e-44 184.9 203 54.2
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.7e-44 184.9 347 40.3
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.0e-44 184.1 338 41.1
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.2e-42 176.4 196 44.4
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.4e-41 175.3 312 39.1
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.8e-41 174.9 213 46.5
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.2e-40 172.2 188 50.5
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.2e-39 167.9 214 48.6
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 2.9e-39 167.5 193 50.8
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 7.8e-37 159.5 212 44.8
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.3e-36 158.7 331 37.2
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 9.6e-35 152.5 201 46.3
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.6e-34 151.8 493 29.0
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 6.9e-33 146.4 174 47.7
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.8e-32 143.3 302 36.8
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 9.9e-32 142.5 298 36.6
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.3e-31 142.1 219 41.1
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 3.8e-31 140.6 192 42.7
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.8e-31 140.6 253 37.9
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 8.4e-31 139.4 305 34.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.2e-30 137.5 463 27.6
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.4e-30 136.7 292 34.9
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.7e-29 134.4 68 100.0
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.6e-29 133.7 284 33.1
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.6e-29 133.7 216 39.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.0e-28 132.5 264 35.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 5.1e-28 130.2 498 26.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.1e-27 129.0 198 40.4
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 5.6e-27 126.7 281 35.6
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.6e-27 126.7 123 60.2
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 5.6e-27 126.7 112 58.0
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.7e-26 124.0 269 36.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.1e-25 120.9 336 31.8
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.0e-25 120.6 240 35.8
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 9.0e-25 119.4 127 55.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 9.0e-25 119.4 143 49.7
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-24 119.0 122 55.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 9.9e-24 115.9 217 40.1
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.7e-23 115.2 147 48.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 2.9e-23 114.4 206 36.9
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.9e-23 114.4 137 51.1
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.8e-23 114.0 235 37.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.4e-22 112.1 242 36.4
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 3.2e-22 110.9 88 64.8
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.2e-21 109.0 110 44.5
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 6.0e-21 106.7 298 35.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 7.9e-21 106.3 218 38.5
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.0e-20 104.4 250 30.0
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.8e-18 97.8 73 64.4
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 7.6e-16 89.7 70 61.4
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-14 85.9 106 52.8
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 9.3e-14 82.8 99 50.5
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-13 81.6 128 36.7
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 2.4e-09 68.2 81 46.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 3.1e-09 67.8 285 29.5
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.3e-09 67.0 42 69.0
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.2e-06 57.4 42 59.5


User provided reference genes

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