Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.4e-97 357.5 185 100.0
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-82 309.3 175 90.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-82 309.3 175 90.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.2e-81 305.8 174 92.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.9e-65 252.3 195 76.9
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 7.4e-53 211.1 125 87.2
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.6e-50 202.6 124 88.7
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 3.1e-35 152.5 102 77.5
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 3.8e-33 145.6 106 70.8
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.9e-32 143.3 110 64.5
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 2.5e-32 142.9 80 82.5
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.6e-31 140.2 110 64.5
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.1e-31 139.8 81 79.0
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 3.6e-31 139.0 80 78.8
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.7e-31 138.7 109 65.1
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.5e-29 133.7 120 57.5
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.0e-29 133.3 109 63.3
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 3.3e-29 132.5 101 70.3
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 7.4e-29 131.3 79 77.2
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.7e-28 130.2 112 65.2
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.3e-28 128.3 107 59.8
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 6.3e-28 128.3 107 59.8
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.1e-27 127.5 78 82.1
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.4e-27 127.1 107 59.8
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 7.0e-27 124.8 106 61.3
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 9.1e-27 124.4 115 60.0
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 1.2e-26 124.0 110 60.9
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.2e-26 124.0 123 53.7
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 1.6e-26 123.6 80 76.2
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 2.0e-26 123.2 105 70.5
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.0e-26 123.2 80 72.5
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 5.9e-26 121.7 76 75.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.7e-25 120.2 76 76.3
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 3.8e-25 119.0 116 51.7
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 5.0e-25 118.6 82 63.4
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 6.5e-25 118.2 77 74.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 6.5e-25 118.2 96 60.4
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.1e-24 117.5 108 52.8
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 1.5e-24 117.1 76 72.4
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.9e-24 116.7 116 55.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.9e-24 116.7 94 62.8
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.5e-24 116.3 81 69.1
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 7.2e-24 114.8 115 52.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 9.4e-24 114.4 100 54.0
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 9.4e-24 114.4 74 71.6
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.6e-23 113.6 79 64.6
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.6e-23 113.6 93 61.3
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.6e-23 113.6 89 59.6
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.1e-23 113.2 72 72.2
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.7e-23 112.8 76 67.1
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-22 110.9 72 69.4
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.4e-22 110.5 77 63.6
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 4.0e-22 109.0 68 79.4
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 4.0e-22 109.0 68 79.4
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-22 109.0 71 70.4
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 8.8e-22 107.8 77 68.8
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 8.8e-22 107.8 89 56.2
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 8.8e-22 107.8 102 55.9
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.5e-21 107.1 77 61.0
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 2.0e-21 106.7 86 55.8
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.0e-21 106.7 89 57.3
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.6e-21 106.3 97 60.8
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.6e-21 106.3 94 61.7
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 3.3e-21 105.9 78 62.8
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 3.3e-21 105.9 84 56.0
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 4.4e-21 105.5 77 59.7
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 4.4e-21 105.5 106 49.1
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 5.7e-21 105.1 76 67.1
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 5.7e-21 105.1 78 62.8
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 9.7e-21 104.4 76 61.8
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 9.7e-21 104.4 68 73.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.3e-20 104.0 76 63.2
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.7e-20 103.6 81 55.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.2e-20 103.2 85 57.6
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.2e-20 103.2 68 73.5
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 2.8e-20 102.8 73 61.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.8e-20 102.8 68 69.1
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-19 100.9 70 65.7
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.8e-19 100.1 72 65.3
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 4.1e-19 99.0 86 57.0
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 4.1e-19 99.0 77 61.0
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 4.1e-19 99.0 73 61.6
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 5.3e-19 98.6 75 62.7
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.3e-19 98.6 70 64.3
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 7.0e-19 98.2 81 55.6
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.6e-18 97.1 75 62.7
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-18 96.7 78 60.3
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 2.7e-18 96.3 70 64.3
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 2.7e-18 96.3 69 68.1
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 3.5e-18 95.9 73 57.5
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 3.5e-18 95.9 73 54.8
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 7.7e-18 94.7 118 44.1
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.0e-17 94.4 73 56.2
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.0e-17 94.4 73 56.2
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.0e-17 94.4 73 56.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.3e-17 94.0 69 62.3
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.7e-17 93.6 78 57.7
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 3.8e-17 92.4 71 54.9
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 3.8e-17 92.4 71 54.9
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 3.8e-17 92.4 71 54.9
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 3.8e-17 92.4 71 57.7
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 6.5e-17 91.7 73 52.1
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 6.5e-17 91.7 73 54.8
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.1e-16 90.9 71 54.9
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.9e-16 90.1 73 52.1
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.9e-16 90.1 71 53.5
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.9e-16 90.1 69 60.9
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.5e-16 89.7 71 53.5
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 3.2e-16 89.4 67 59.7
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 5.5e-16 88.6 70 51.4
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.2e-15 87.4 70 52.9
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.6e-15 87.0 67 58.2
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.6e-15 87.0 67 58.2
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.6e-15 87.0 67 58.2
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.1e-15 86.7 68 55.9
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.0e-14 84.3 67 56.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.4e-14 84.0 74 55.4
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.3e-12 77.4 111 43.2
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.7e-12 77.0 64 59.4
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.7e-12 77.0 82 56.1
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 2.0e-10 70.1 54 63.0
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 5.9e-10 68.6 50 70.0
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 5.0e-09 65.5 72 52.8
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.1e-08 64.3 47 61.7
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 5.5e-08 62.0 46 65.2
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.1e-07 60.1 74 44.6
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 6.1e-07 58.5 44 65.9
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.4e-06 57.4 45 64.4
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.4e-06 57.4 39 69.2


User provided reference genes

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