Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.8e-34 146.7 63 100.0
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 7.1e-32 139.8 59 100.0
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.1e-32 139.8 59 100.0
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.1e-32 139.8 59 100.0
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.0e-30 134.4 58 98.3
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 5.6e-29 130.2 58 94.8
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 7.4e-29 129.8 59 93.2
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 7.4e-29 129.8 59 93.2
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 2.1e-28 128.3 59 89.8
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 6.2e-28 126.7 59 88.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 8.1e-28 126.3 58 91.4
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.1e-27 125.9 59 86.4
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.1e-27 125.9 59 86.4
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.8e-27 125.2 59 88.1
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.8e-27 125.2 59 88.1
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.8e-27 125.2 59 88.1
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.8e-27 125.2 58 91.4
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.4e-27 124.8 59 86.4
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 2.4e-27 124.8 58 89.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.3e-27 123.6 58 87.9
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.3e-27 123.6 58 87.9
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 6.9e-27 123.2 59 86.4
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 6.9e-27 123.2 58 87.9
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 6.9e-27 123.2 58 86.2
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 9.0e-27 122.9 58 84.5
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 9.0e-27 122.9 58 84.5
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 9.0e-27 122.9 57 89.5
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 9.0e-27 122.9 59 84.7
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 9.0e-27 122.9 59 88.1
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.0e-27 122.9 59 88.1
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 9.0e-27 122.9 59 84.7
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 9.0e-27 122.9 59 86.4
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 9.0e-27 122.9 59 86.4
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.2e-26 122.5 59 84.7
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-26 122.5 59 86.4
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.2e-26 122.5 59 84.7
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.5e-26 122.1 59 86.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.5e-26 122.1 59 84.7
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 2.0e-26 121.7 59 83.1
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.0e-26 121.7 59 83.1
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 2.0e-26 121.7 58 87.9
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.6e-26 121.3 58 86.2
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 3.4e-26 120.9 61 82.0
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.5e-26 120.6 59 84.7
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.5e-26 120.6 58 87.9
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.5e-26 120.6 59 84.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 5.8e-26 120.2 61 82.0
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.8e-26 120.2 59 84.7
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.8e-26 120.2 59 84.7
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 5.8e-26 120.2 59 84.7
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 7.6e-26 119.8 58 86.2
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 7.6e-26 119.8 59 83.1
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 7.6e-26 119.8 58 86.2
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 7.6e-26 119.8 59 81.4
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 7.6e-26 119.8 59 81.4
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.6e-26 119.8 62 79.0
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.6e-26 119.8 58 84.5
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 7.6e-26 119.8 59 83.1
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 7.6e-26 119.8 58 86.2
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.0e-25 119.4 62 79.0
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 83.1
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 81.4
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 81.4
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.0e-25 119.4 58 87.9
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-25 119.0 58 84.5
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.3e-25 119.0 59 83.1
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.3e-25 119.0 61 80.3
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.3e-25 119.0 59 83.1
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.7e-25 118.6 58 86.2
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 2.2e-25 118.2 58 84.5
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-25 118.2 59 81.4
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-25 118.2 59 81.4
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 2.9e-25 117.9 59 81.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 2.9e-25 117.9 59 83.1
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 3.8e-25 117.5 61 82.0
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 3.8e-25 117.5 59 81.4
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.8e-25 117.5 59 83.1
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 3.8e-25 117.5 59 83.1
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 3.8e-25 117.5 58 82.8
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 4.9e-25 117.1 58 82.8
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.9e-25 117.1 59 84.7
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.9e-25 117.1 59 84.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.9e-25 117.1 59 79.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.9e-25 117.1 59 83.1
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 4.9e-25 117.1 58 82.8
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 6.5e-25 116.7 59 79.7
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 6.5e-25 116.7 59 84.7
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 81.4
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 79.7
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 84.7
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 78.0
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.4e-24 115.5 58 81.0
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-24 115.5 58 81.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-24 115.5 58 81.0
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-24 115.5 58 81.0
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.4e-24 115.5 58 81.0
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.4e-24 115.5 58 81.0
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 1.4e-24 115.5 59 81.4
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.4e-24 115.5 59 78.0
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 2.5e-24 114.8 59 81.4
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.2e-24 114.4 59 79.7
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 3.2e-24 114.4 59 81.4
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.2e-24 114.4 59 81.4
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.2e-24 114.4 59 78.0
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.2e-24 114.0 59 81.4
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 4.2e-24 114.0 58 81.0
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 4.2e-24 114.0 59 74.6
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 5.5e-24 113.6 59 78.0
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 5.5e-24 113.6 58 82.8
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 5.5e-24 113.6 58 82.8
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 7.1e-24 113.2 58 79.3
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 7.1e-24 113.2 82 62.2
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 9.3e-24 112.8 56 87.5
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 9.3e-24 112.8 57 84.2
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.2e-23 112.5 59 79.7
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.6e-23 112.1 58 77.6
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.7e-23 111.3 60 78.3
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.7e-23 111.3 59 81.4
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 3.5e-23 110.9 58 79.3
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 3.5e-23 110.9 59 78.0
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 4.6e-23 110.5 59 81.4
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 7.9e-23 109.8 59 78.0
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 7.9e-23 109.8 59 78.0
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 7.9e-23 109.8 59 78.0
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.0e-22 109.4 59 74.6
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.3e-22 109.0 59 78.0
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.8e-22 108.6 59 78.0
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 1.8e-22 108.6 59 74.6
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 2.3e-22 108.2 58 75.9
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.3e-22 108.2 59 76.3
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.9e-22 107.5 59 79.7
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 3.9e-22 107.5 58 72.4
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 3.9e-22 107.5 59 71.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 5.1e-22 107.1 59 72.9
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.1e-22 107.1 58 74.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.1e-21 105.9 59 74.6
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.5e-21 105.5 58 74.1
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 2.5e-21 104.8 59 71.2
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 3.3e-21 104.4 59 72.9
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 4.3e-21 104.0 59 74.6
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 5.7e-21 103.6 56 75.0
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 5.7e-21 103.6 59 71.2
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 5.7e-21 103.6 59 71.2
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 5.7e-21 103.6 59 72.9
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 9.6e-21 102.8 59 69.5
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 9.6e-21 102.8 58 72.4
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.3e-20 102.4 59 71.2
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 2.1e-20 101.7 59 71.2
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 2.1e-20 101.7 56 71.4
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 3.7e-20 100.9 58 70.7
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 6.3e-20 100.1 61 67.2
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 6.3e-20 100.1 59 71.2
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.4e-19 99.0 61 63.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.4e-19 99.0 59 67.8
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 3.1e-19 97.8 57 70.2
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 3.1e-19 97.8 61 68.9
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 6.9e-19 96.7 88 51.1
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.2e-18 95.9 59 72.9
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 1.2e-18 95.9 56 64.3
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.2e-18 95.9 58 67.2
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 2.6e-18 94.7 58 65.5
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.6e-18 94.7 59 67.8
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.6e-18 94.7 59 67.8
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.4e-18 94.4 59 66.1
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.7e-17 92.0 55 63.6
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 8.5e-17 89.7 50 64.0
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.9e-16 88.6 53 66.0
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.9e-16 88.6 53 66.0
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 1.6e-15 85.5 56 60.7
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 2.1e-15 85.1 61 59.0
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 7.9e-15 83.2 57 54.4
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-14 82.4 43 81.4
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 1.9e-13 78.6 57 56.1
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.7e-13 77.0 43 79.1
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.7e-13 77.0 43 79.1
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.6e-12 75.5 56 60.7
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 6.3e-12 73.6 29 93.1
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 6.3e-12 73.6 62 53.2
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 9.1e-11 69.7 36 83.3
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 9.1e-11 69.7 38 65.8
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 1.7e-09 65.5 62 50.0
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 7.2e-08 60.1 44 59.1
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 1.2e-07 59.3 44 61.4
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 5.1e-06 53.9 44 56.8


User provided reference genes

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