Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-181 638.6 391 100.0
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.6e-174 616.3 388 89.7
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-173 612.1 388 90.7
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.5e-172 609.8 390 94.1
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.2e-134 483.8 395 81.8
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.8e-132 474.9 363 81.8
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.0e-99 367.9 363 72.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 1.7e-67 260.8 397 51.6
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 3.2e-66 256.5 423 50.8
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 4.2e-66 256.1 283 58.7
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 2.7e-65 253.4 421 47.7
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.0e-64 251.5 411 45.7
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 1.0e-64 251.5 414 46.4
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 1.2e-63 248.1 408 47.8
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.4e-63 246.5 445 44.3
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 4.4e-63 246.1 410 46.8
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 7.5e-63 245.4 409 47.4
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.3e-62 244.6 412 46.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.7e-62 244.2 272 57.4
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.8e-62 243.4 408 46.6
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.8e-62 243.4 406 47.8
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 2.8e-62 243.4 391 47.6
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.7e-62 243.0 409 47.7
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 6.3e-62 242.3 410 46.3
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 6.3e-62 242.3 447 43.6
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.1e-61 241.5 395 48.6
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.4e-61 241.1 270 57.4
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 4.1e-61 239.6 410 47.1
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 5.4e-61 239.2 409 49.4
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 7.0e-61 238.8 417 46.0
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 9.1e-61 238.4 414 46.1
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 1.2e-60 238.0 421 46.3
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 1.2e-60 238.0 289 53.6
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.6e-60 237.7 418 46.7
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.0e-60 237.3 413 47.5
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.5e-60 236.1 417 45.6
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.5e-60 236.1 413 47.2
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 5.9e-60 235.7 412 44.4
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 7.7e-60 235.3 397 46.6
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 2.2e-59 233.8 404 47.5
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 2.2e-59 233.8 383 48.3
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 6.5e-59 232.3 298 52.0
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.5e-59 232.3 436 43.6
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 8.5e-59 231.9 277 55.2
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 1.1e-58 231.5 420 46.4
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.5e-58 231.1 263 55.9
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.2e-58 229.9 301 51.5
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.2e-58 229.9 417 46.3
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.2e-58 229.6 421 47.0
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 7.2e-58 228.8 285 53.3
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 1.6e-57 227.6 435 44.1
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 1.6e-57 227.6 400 46.8
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 1.6e-57 227.6 400 47.5
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.1e-57 227.3 429 44.3
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 3.6e-57 226.5 396 47.5
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.6e-57 226.5 412 46.1
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 8.0e-57 225.3 396 48.0
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.0e-56 224.9 263 54.0
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.3e-56 223.8 252 57.1
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 3.0e-56 223.4 423 44.0
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 4.0e-56 223.0 408 43.9
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 5.2e-56 222.6 258 54.3
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 8.8e-56 221.9 406 46.3
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.2e-55 221.5 392 44.9
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 1.2e-55 221.5 283 50.5
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 3.4e-55 219.9 419 43.4
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 5.7e-55 219.2 415 44.6
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 3.7e-54 216.5 385 47.5
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 6.3e-54 215.7 252 54.4
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 1.8e-53 214.2 252 54.4
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.2e-52 211.5 348 47.4
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 2.7e-52 210.3 396 46.7
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 3.5e-52 209.9 394 44.2
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 5.0e-51 206.1 390 44.4
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.9e-50 204.1 418 43.5
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 1.9e-50 204.1 344 47.4
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 5.6e-50 202.6 438 38.8
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.1e-49 200.7 383 44.1
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 3.6e-49 199.9 389 42.9
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 6.1e-49 199.1 263 47.9
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 8.0e-49 198.7 389 43.2
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 8.0e-49 198.7 281 49.1
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 8.0e-49 198.7 411 40.6
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 1.0e-48 198.4 341 42.5
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.0e-48 198.4 288 49.7
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.4e-48 198.0 385 43.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 4.0e-48 196.4 390 43.3
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 5.2e-48 196.1 371 45.0
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 8.9e-48 195.3 281 48.8
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.2e-47 194.9 276 46.7
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 4.4e-47 193.0 297 44.4
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 5.7e-47 192.6 395 42.5
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 7.5e-47 192.2 434 38.9
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.2e-46 190.7 263 47.5
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.4e-45 187.2 392 41.1
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 5.4e-45 186.0 235 52.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 1.2e-44 184.9 289 46.7
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.2e-44 184.9 396 42.4
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.6e-44 184.5 370 43.2
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.6e-44 184.5 238 52.1
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.6e-44 184.5 515 37.7
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.7e-44 183.7 320 40.6
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 3.5e-44 183.3 218 53.2
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 1.0e-43 181.8 407 40.5
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.1e-42 178.3 405 38.8
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 4.3e-42 176.4 228 52.2
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 2.8e-41 173.7 275 47.6
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 2.3e-40 170.6 274 46.7
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 4.0e-40 169.9 230 50.9
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 1.5e-39 167.9 228 50.4
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 9.8e-39 165.2 228 48.7
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 9.8e-39 165.2 238 48.7
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.9e-37 161.0 323 42.7
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.0e-36 157.5 372 37.9
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 2.0e-36 157.5 271 43.2
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 6.0e-36 156.0 262 44.3
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 6.6e-35 152.5 277 39.4
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 2.8e-33 147.1 226 43.8
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 8.1e-33 145.6 231 44.2
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.2e-32 142.9 111 74.8
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.5e-31 141.4 212 46.2
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.2e-29 132.1 152 55.9
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 7.8e-28 129.0 240 42.1
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 7.3e-26 122.5 318 33.6
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.9e-22 109.8 258 37.6
FAN07G1886 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.3e-18 96.7 74 77.0
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 6.2e-17 92.8 142 47.2
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.9e-14 84.0 67 73.1
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.7e-12 77.4 79 60.8
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 4.6e-12 76.6 88 50.0
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 7.3e-10 69.3 108 45.4
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 4.0e-08 63.5 140 33.6
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 3.4e-07 60.5 67 50.7
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.7e-06 58.2 196 29.6


User provided reference genes

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