Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.6e-291 1004.2 512 100.0
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 9.2e-287 989.6 513 99.0
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 5.0e-285 983.8 513 98.2
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.7e-283 977.2 513 97.5
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.4e-282 975.7 513 97.3
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 3.1e-274 948.0 513 94.9
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.0e-245 853.2 512 84.0
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 5.1e-245 850.9 510 84.7
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 6.6e-245 850.5 510 84.1
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 5.9e-225 784.3 509 77.4
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.1e-218 763.5 518 76.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.4e-218 762.3 508 74.0
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 6.9e-218 760.8 514 75.1
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 3.6e-214 748.4 513 73.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 7.9e-214 747.3 513 73.1
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.4e-213 746.5 513 73.3
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.8e-213 746.1 506 71.9
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 5.1e-213 744.6 515 74.4
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 8.8e-213 743.8 524 72.7
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 8.8e-213 743.8 528 70.6
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.1e-212 743.4 516 73.6
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.5e-212 742.3 522 73.2
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 5.7e-212 741.1 509 72.5
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.3e-211 740.0 509 72.3
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.7e-211 739.6 513 73.5
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.2e-211 739.2 507 73.2
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 2.8e-211 738.8 506 72.5
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 3.7e-211 738.4 516 72.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 4.8e-211 738.0 510 73.1
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 8.2e-211 737.3 510 72.0
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.1e-210 735.3 514 73.0
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.1e-210 734.9 509 71.9
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 7.7e-209 730.7 525 70.1
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 3.8e-208 728.4 505 71.1
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 3.8e-208 728.4 510 72.7
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 8.5e-208 727.2 515 72.0
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 4.2e-207 724.9 508 71.7
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.6e-206 723.0 508 71.5
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.1e-206 722.6 536 68.8
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.8e-205 719.5 510 70.4
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.1e-204 716.8 508 71.3
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.7e-203 713.0 508 70.9
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.7e-203 711.8 513 67.8
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 3.7e-203 711.8 515 69.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.4e-202 709.1 566 64.8
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.5e-201 705.3 488 72.5
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.0e-200 703.7 510 69.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.7e-200 703.0 500 70.4
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.8e-200 701.8 507 67.9
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 8.5e-200 700.7 510 67.1
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.2e-199 697.6 602 62.1
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.6e-198 696.4 508 67.7
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.2e-195 686.0 522 67.8
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.1e-194 681.8 506 69.0
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.6e-193 679.9 506 67.8
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.3e-192 676.8 517 68.3
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 2.5e-191 672.5 507 68.0
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.2e-191 671.8 520 64.0
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 9.4e-191 670.6 510 65.9
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.7e-190 669.1 520 64.8
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.7e-187 659.8 512 66.4
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.2e-180 637.1 518 62.0
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 7.5e-180 634.4 498 63.9
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 7.5e-180 634.4 519 62.8
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 2.2e-179 632.9 540 59.6
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 4.9e-179 631.7 515 64.3
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.4e-178 629.4 513 63.9
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.0e-177 626.3 533 62.9
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.0e-177 626.3 534 60.3
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 5.9e-177 624.8 398 78.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 7.7e-177 624.4 530 62.6
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 2.3e-176 622.9 522 61.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 6.6e-176 621.3 522 62.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.7e-174 615.1 468 67.9
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.7e-174 615.1 500 62.8
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 6.8e-173 611.3 567 58.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 8.9e-173 610.9 543 58.0
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 4.4e-172 608.6 462 67.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.9e-171 605.1 529 60.7
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 4.1e-170 602.1 521 61.0
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 5.4e-170 601.7 521 60.8
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 5.4e-170 601.7 521 60.8
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 5.4e-170 601.7 521 60.8
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 5.9e-169 598.2 521 60.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 7.8e-169 597.8 557 58.5
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 2.7e-161 572.8 510 57.6
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.2e-157 558.5 365 77.0
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.8e-157 558.1 411 66.7
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 3.6e-150 535.8 506 54.7
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-147 526.9 278 97.5
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 3.8e-147 525.8 350 75.1
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 9.3e-130 468.0 380 63.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.6e-121 440.7 501 51.5
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 3.7e-118 429.5 236 93.2
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.9e-117 425.2 470 54.0
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 2.3e-112 410.2 533 44.1
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.1e-110 403.7 533 43.9
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 7.9e-105 385.2 511 40.1
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.5e-103 380.2 492 48.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.7e-99 367.5 253 71.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 4.1e-93 346.3 253 68.4
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 6.3e-86 322.4 557 34.8
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 5.5e-82 309.3 264 58.3
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.7e-78 297.7 210 71.9
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 7.0e-77 292.4 204 71.1
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 2.0e-76 290.8 459 39.2
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.8e-72 275.8 219 67.1
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.4e-64 251.5 260 46.2
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 3.4e-63 246.9 248 59.3
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.1e-61 241.9 243 55.1
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.0e-59 235.3 221 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 5.0e-59 233.0 230 48.7
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.8e-55 218.8 492 28.3
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 2.5e-50 204.1 181 56.4
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.8e-48 198.0 259 49.4
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.8e-41 174.1 444 30.4
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.5e-39 168.3 150 58.0
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 5.4e-37 159.8 182 45.1
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 4.6e-36 156.8 529 27.8
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 6.6e-27 126.3 83 73.5
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 9.6e-26 122.5 100 57.0
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.2e-23 115.5 174 37.9
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.5e-23 115.2 112 52.7
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 6.4e-22 109.8 126 50.8
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.9e-21 108.2 121 49.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.3e-21 105.9 101 54.5
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 5.1e-19 100.1 190 39.5
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.7e-14 85.1 53 64.2
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.8e-07 60.1 72 48.6
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 7.6e-07 59.7 81 40.7
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 6.4e-06 56.6 46 60.9


User provided reference genes

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