Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 2.0e-127 459.1 234 100.0
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 2.3e-123 445.7 234 95.3
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.2e-121 439.9 231 94.8
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 3.7e-118 428.3 231 95.2
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.3e-115 419.9 225 94.2
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 4.7e-105 384.8 238 84.0
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 5.2e-96 354.8 240 76.7
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 3.9e-91 338.6 212 81.6
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 5.2e-88 328.2 231 71.9
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 9.9e-87 323.9 212 74.5
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 1.4e-85 320.1 230 71.3
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 1.4e-85 320.1 244 68.4
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 2.1e-84 316.2 232 69.8
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 7.8e-84 314.3 216 74.1
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 1.3e-83 313.5 213 73.7
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 1.3e-83 313.5 238 67.2
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 3.9e-83 312.0 223 70.4
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 5.6e-82 308.1 236 67.8
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 7.3e-82 307.8 280 58.9
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 1.1e-80 303.9 234 66.2
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 1.4e-80 303.5 234 66.2
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 3.1e-80 302.4 215 70.2
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 5.3e-80 301.6 243 64.2
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 1.2e-79 300.4 215 69.3
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 1.5e-79 300.1 234 65.0
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 2.6e-79 299.3 212 70.3
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 2.6e-79 299.3 213 71.8
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 4.5e-79 298.5 214 66.8
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 7.6e-79 297.7 219 67.1
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.3e-78 297.0 233 64.8
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 1.3e-78 297.0 234 64.5
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 1.7e-78 296.6 228 68.9
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 2.2e-78 296.2 212 68.4
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 2.2e-78 296.2 213 70.0
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 2.9e-78 295.8 220 68.2
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 3.8e-78 295.4 234 65.4
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 4.9e-78 295.0 212 67.0
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 6.4e-78 294.7 213 69.0
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 8.4e-78 294.3 214 67.3
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 4.2e-77 292.0 212 67.5
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 7.1e-77 291.2 213 68.5
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 7.1e-77 291.2 216 67.6
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 9.3e-77 290.8 231 63.2
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 9.3e-77 290.8 231 63.2
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 1.6e-76 290.0 234 63.7
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 2.1e-76 289.7 213 68.1
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 3.5e-76 288.9 212 67.0
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 4.6e-76 288.5 213 67.1
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 1.0e-75 287.3 236 63.6
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 1.0e-75 287.3 243 62.1
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 2.3e-75 286.2 234 61.5
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 8.7e-75 284.3 234 61.5
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 1.1e-74 283.9 212 63.2
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 1.5e-74 283.5 244 61.9
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 1.9e-74 283.1 234 62.0
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 2.5e-74 282.7 235 59.6
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 3.3e-74 282.3 230 63.0
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 4.3e-74 282.0 223 63.7
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 4.3e-74 282.0 234 63.7
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 9.6e-74 280.8 234 62.8
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 2.8e-73 279.3 213 62.0
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.8e-73 279.3 234 62.0
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.8e-73 279.3 234 63.7
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 6.2e-73 278.1 234 63.7
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 1.4e-72 276.9 234 61.5
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 3.1e-72 275.8 217 65.4
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 1.5e-71 273.5 212 62.7
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.5e-71 273.5 234 61.1
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 2.9e-70 269.2 245 60.0
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 3.8e-70 268.9 228 62.3
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 4.9e-70 268.5 212 63.2
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 8.4e-70 267.7 270 55.6
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 1.1e-69 267.3 234 61.5
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 1.4e-69 266.9 212 65.1
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 9.3e-69 264.2 212 63.7
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 9.3e-69 264.2 212 59.0
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 1.2e-68 263.8 212 63.2
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 6.0e-68 261.5 212 63.7
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 6.0e-68 261.5 228 61.0
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 6.0e-68 261.5 212 60.4
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 7.9e-68 261.2 212 60.4
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 7.9e-68 261.2 214 60.7
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 1.0e-67 260.8 212 63.7
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 1.3e-67 260.4 207 62.8
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 1.8e-67 260.0 212 63.2
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 1.8e-67 260.0 212 59.9
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 2.3e-67 259.6 212 63.2
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 2.3e-67 259.6 212 63.2
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 2.3e-67 259.6 212 63.2
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 2.3e-67 259.6 227 55.5
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 2.3e-67 259.6 212 60.8
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 3.0e-67 259.2 222 60.8
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 3.9e-67 258.8 212 60.8
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 5.1e-67 258.5 214 60.3
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 7.4e-66 254.6 212 59.0
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 2.8e-65 252.7 212 59.0
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 1.1e-64 250.8 192 63.5
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 2.2e-62 243.0 212 54.7
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 2.9e-62 242.7 214 57.9
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 6.5e-62 241.5 215 54.4
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 3.9e-59 232.3 150 74.0
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 7.4e-58 228.0 158 69.6
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 8.2e-57 224.6 210 57.1
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 7.6e-55 218.0 142 76.1
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 1.9e-53 213.4 139 71.2
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 4.2e-53 212.2 145 69.0
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.5e-50 203.8 145 69.7
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 4.1e-48 195.7 214 46.3
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.4e-45 187.2 211 48.8
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 2.2e-41 173.3 126 63.5
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 7.7e-39 164.9 114 67.5
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 3.3e-34 149.4 191 44.0
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 4.5e-15 85.9 181 33.7
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 8.6e-14 81.6 114 39.5
Gohir.A01G114301 Gossypium hirsutum HOM05D006861 ORTHO05D008620 5.9e-07 58.9 56 55.4
MCO13G047 Micromonas commoda HOM05D006861 ORTHO05D008620 5.9e-07 58.9 195 28.2


User provided reference genes

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