Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0117 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.8e-167 592.4 287 100.0
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.6e-78 297.0 291 57.4
FAN03G1615 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.2e-73 280.8 138 97.1
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 6.5e-64 248.4 258 54.7
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.9e-63 246.9 258 54.3
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 5.5e-63 245.4 258 55.0
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 5.5e-63 245.4 247 55.9
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 4.8e-59 232.3 260 52.3
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 1.1e-50 204.5 226 50.4
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 1.7e-48 197.2 228 50.0
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 8.5e-48 194.9 228 48.7
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 2.5e-47 193.4 193 51.3
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 4.2e-47 192.6 228 48.2
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 1.6e-46 190.7 249 43.8
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 1.6e-46 190.7 254 44.5
Prupe.1G207300 Prunus persica HOM05D003581 ORTHO05D004332 1.6e-46 190.7 149 63.8
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 4.7e-46 189.1 248 45.2
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 6.1e-46 188.7 228 46.5
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 1.4e-45 187.6 228 46.1
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 1.8e-45 187.2 228 45.2
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 1.8e-45 187.2 240 43.3
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 2.3e-45 186.8 228 45.2
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 2.3e-45 186.8 228 45.2
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 3.0e-45 186.4 228 45.6
Oeu015722.1 Olea europaea HOM05D003581 ORTHO05D004332 3.0e-45 186.4 228 46.5
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 3.9e-45 186.0 228 46.9
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 6.7e-45 185.3 228 47.4
Oeu015721.1 Olea europaea HOM05D003581 ORTHO05D004332 1.1e-44 184.5 228 45.6
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 1.1e-44 184.5 228 46.1
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.5e-44 184.1 228 46.1
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 1.5e-44 184.1 226 46.5
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 2.0e-44 183.7 260 44.2
CiPaw.01G170500 Carya illinoinensis HOM05D003581 ORTHO05D004332 2.6e-44 183.3 228 46.9
DCAR_005472 Daucus carota HOM05D003581 ORTHO05D004332 2.6e-44 183.3 243 44.9
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 2.6e-44 183.3 256 45.3
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 5.7e-44 182.2 235 44.7
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 5.7e-44 182.2 228 46.1
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 9.7e-44 181.4 228 43.9
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 1.7e-43 180.6 260 41.5
FAN03G2964 Fragaria x ananassa HOM05D003581 ORTHO05D208763 1.7e-43 180.6 94 97.9
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 1.7e-43 180.6 228 44.3
Ciclev10020241m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.2e-43 180.3 228 45.6
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 4.8e-43 179.1 243 42.4
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 4.8e-43 179.1 228 43.0
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 4.8e-43 179.1 228 43.9
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 4.8e-43 179.1 228 43.4
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 8.2e-43 178.3 228 45.2
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 8.2e-43 178.3 228 45.2
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 8.2e-43 178.3 254 42.1
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 1.4e-42 177.6 269 39.4
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.8e-42 177.2 228 44.7
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 2.4e-42 176.8 249 41.0
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 5.3e-42 175.6 228 44.3
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 7.0e-42 175.3 228 45.2
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 7.0e-42 175.3 260 41.5
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 7.0e-42 175.3 228 43.0
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 9.1e-42 174.9 228 43.4
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.2e-41 174.5 260 39.6
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 2.6e-41 173.3 228 43.4
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 2.6e-41 173.3 260 41.2
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 2.6e-41 173.3 212 46.2
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 3.5e-41 172.9 209 46.9
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 3.5e-41 172.9 260 39.2
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 4.5e-41 172.6 228 44.7
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 4.5e-41 172.6 226 42.5
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 4.5e-41 172.6 228 43.0
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 4.5e-41 172.6 228 42.1
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 5.9e-41 172.2 228 43.0
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 1.0e-40 171.4 260 41.5
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 2.2e-40 170.2 229 42.4
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 2.2e-40 170.2 228 41.7
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 2.2e-40 170.2 260 40.0
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 2.9e-40 169.9 260 40.4
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 5.0e-40 169.1 229 42.8
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 6.5e-40 168.7 229 42.4
PGSC0003DMG400014635 Solanum tuberosum HOM05D003581 ORTHO05D004332 6.5e-40 168.7 209 44.5
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 1.1e-39 167.9 250 39.6
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 1.1e-39 167.9 261 39.1
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.1e-39 167.9 229 41.5
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 1.1e-39 167.9 229 41.5
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 1.1e-39 167.9 250 40.4
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 1.5e-39 167.5 229 41.9
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 1.5e-39 167.5 229 42.4
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.5e-39 167.5 228 44.7
BraA07t30118Z Brassica rapa HOM05D003581 ORTHO05D004332 1.9e-39 167.2 262 40.5
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 1.9e-39 167.2 255 39.6
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 1.9e-39 167.2 154 57.1
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 2.5e-39 166.8 255 39.6
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 2.5e-39 166.8 255 39.6
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 2.5e-39 166.8 255 39.6
Cpa.g.sc9.366 Carica papaya HOM05D003581 ORTHO05D004332 2.5e-39 166.8 151 58.3
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 3.2e-39 166.4 222 42.3
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 4.2e-39 166.0 259 39.4
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 4.2e-39 166.0 228 41.7
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 5.5e-39 165.6 262 40.1
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 5.5e-39 165.6 255 39.6
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 5.5e-39 165.6 262 40.1
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 5.5e-39 165.6 230 43.0
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 5.5e-39 165.6 151 55.6
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 5.5e-39 165.6 151 55.6
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 5.5e-39 165.6 229 42.8
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 9.4e-39 164.9 227 43.2
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 9.4e-39 164.9 256 39.5
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 1.2e-38 164.5 229 41.0
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 1.6e-38 164.1 227 40.5
FAN28G1517 Fragaria x ananassa HOM05D003581 ORTHO05D205482 2.7e-38 163.3 85 96.5
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 2.7e-38 163.3 228 43.4
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 3.6e-38 162.9 226 39.4
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 4.7e-38 162.5 231 44.2
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 8.0e-38 161.8 150 57.3
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 1.4e-37 161.0 228 41.7
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 1.8e-37 160.6 150 57.3
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 3.0e-37 159.8 261 38.7
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 4.0e-37 159.5 261 37.9
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 5.2e-37 159.1 260 39.6
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 5.2e-37 159.1 228 41.2
unitig_747.g21694 Utricularia gibba HOM05D003581 ORTHO05D004332 8.8e-37 158.3 227 39.6
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 1.2e-36 157.9 228 40.4
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 1.5e-36 157.5 288 36.1
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 2.6e-36 156.8 158 53.8
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 3.4e-36 156.4 248 39.1
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 4.4e-36 156.0 288 36.5
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 4.4e-36 156.0 228 39.0
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 4.4e-36 156.0 259 40.9
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 4.4e-36 156.0 260 37.7
Nitab4.5_0024222g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 9.7e-36 154.8 268 35.4
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 1.3e-35 154.5 248 37.1
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 1.7e-35 154.1 145 52.4
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 2.8e-35 153.3 250 38.4
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 2.8e-35 153.3 228 38.6
FAN02G4325 Fragaria x ananassa HOM05D003581 ORTHO05D004332 3.7e-35 152.9 71 95.8
Gohir.D02G010400 Gossypium hirsutum HOM05D000101 ORTHO05D002559 4.8e-35 152.5 266 36.1
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 8.3e-35 151.8 153 51.6
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 5.3e-34 149.1 237 36.7
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.2e-33 147.9 166 47.0
FAN21G2715 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.3e-32 144.4 139 58.3
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.7e-32 144.1 205 42.4
CAN.G759.10 Capsicum annuum HOM05D003581 ORTHO05D004332 3.8e-32 142.9 127 53.5
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 3.8e-32 142.9 151 49.7
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 1.1e-31 141.4 153 48.4
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 4.7e-30 136.0 228 36.4
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 8.0e-30 135.2 270 33.0
SEGI_09569 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 1.4e-29 134.4 164 42.7
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 9.8e-28 128.3 213 36.2
vmacro00696 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 1.4e-26 124.4 151 45.7
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 1.8e-26 124.0 273 29.7
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 4.1e-26 122.9 234 30.8
Hund03203 Selenicereus undatus HOM05D003581 ORTHO05D004332 9.1e-26 121.7 67 77.6
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.2e-25 121.3 208 35.6
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 4.5e-25 119.4 158 43.7
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 1.3e-24 117.9 131 46.6
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 2.3e-24 117.1 154 37.7
AagrBONN_evm.TU.Sc2ySwM_228.999 Anthoceros agrestis HOM05D003581 ORTHO05D004332 3.6e-22 109.8 91 56.0
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 1.0e-21 108.2 253 28.1
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 1.2e-20 104.8 69 60.9
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 4.9e-19 99.4 218 29.8
AL5G41680 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 4.1e-18 96.3 158 36.1
Actinidia28980 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.7e-16 90.9 133 41.4
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 2.5e-15 87.0 223 31.4
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 1.0e-13 81.6 163 35.6


User provided reference genes

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