Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.9e-123 447.6 219 100.0
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 2.8e-90 337.4 173 97.1
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.4e-86 325.1 168 95.8
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 7.2e-70 269.6 167 79.0
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 1.6e-69 268.5 167 77.8
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 4.7e-69 266.9 164 81.1
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.0e-67 261.5 185 71.9
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.2e-66 258.1 160 78.1
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 8.6e-47 193.0 162 61.1
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 3.9e-39 167.5 159 53.5
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 1.4e-36 159.1 156 51.9
RcHm_v2.0_Chr7g0231581 Rosa chinensis HOM05D006694 ORTHO05D008240 2.2e-34 151.8 88 86.4
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.6e-29 135.6 151 48.3
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 6.2e-29 133.7 137 53.3
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 3.1e-28 131.3 158 41.1
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 1.2e-27 129.4 161 42.2
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 4.4e-27 127.5 168 42.9
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 7.6e-27 126.7 160 43.1
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 1.7e-26 125.6 178 41.0
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 1.9e-25 122.1 158 42.4
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 1.9e-25 122.1 152 42.8
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 3.2e-25 121.3 173 39.9
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 5.4e-25 120.6 177 40.1
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 4.6e-24 117.5 175 39.4
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.3e-23 115.9 145 44.1
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 1.7e-23 115.5 182 37.4
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 1.7e-23 115.5 156 41.0
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 3.9e-23 114.4 158 42.4
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.9e-23 114.4 144 38.9
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 5.1e-23 114.0 157 40.8
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 6.6e-23 113.6 129 44.2
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 8.6e-23 113.2 83 68.7
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 1.5e-22 112.5 161 44.1
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.9e-22 112.1 144 37.5
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 1.9e-22 112.1 157 40.8
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 4.3e-22 110.9 157 40.1
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 4.3e-22 110.9 156 41.7
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 9.6e-22 109.8 137 42.3
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 4.7e-21 107.5 166 37.3
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 8.1e-21 106.7 145 35.9
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 8.1e-21 106.7 170 38.8
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 1.8e-20 105.5 154 41.6
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 2.4e-20 105.1 158 38.6
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 3.1e-20 104.8 175 34.3
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 4.0e-20 104.4 156 39.1
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 8.9e-20 103.2 133 42.9
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 8.9e-20 103.2 178 37.6
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 8.9e-20 103.2 86 59.3
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 2.0e-19 102.1 162 36.4
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.6e-19 101.7 152 40.1
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 2.6e-19 101.7 145 37.9
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 4.4e-19 100.9 125 41.6
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 7.6e-19 100.1 131 41.2
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 7.6e-19 100.1 133 39.8
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 2.9e-18 98.2 109 43.1
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.9e-18 98.2 175 33.1
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 3.8e-18 97.8 163 35.6
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 3.8e-18 97.8 184 38.6
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 6.4e-18 97.1 146 37.0
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 1.1e-17 96.3 144 41.0
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 1.4e-17 95.9 144 40.3
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 1.9e-17 95.5 96 49.0
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 2.4e-17 95.1 154 37.0
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.4e-17 95.1 130 39.2
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.2e-17 94.7 157 39.5
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.2e-17 94.4 163 38.0
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.4e-17 94.0 137 39.4
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 5.4e-17 94.0 153 34.0
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 5.4e-17 94.0 119 46.2
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.1e-17 93.6 162 37.0
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-16 92.4 163 36.2
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-16 92.4 163 36.2
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 1.6e-16 92.4 144 38.2
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 1.6e-16 92.4 144 38.9
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.6e-16 92.4 132 37.9
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 4.6e-16 90.9 150 34.0
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-15 89.4 166 34.3
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-15 89.4 166 34.3
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 1.3e-15 89.4 161 33.5
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.7e-15 89.0 156 35.9
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.7e-15 89.0 162 37.0
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.7e-15 89.0 162 37.0
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.1e-14 86.3 136 38.2
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.1e-14 86.3 136 38.2
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-14 85.5 166 34.9
Atru.chr3.2947 Acer truncatum HOM05D006694 ORTHO05D008240 5.6e-14 84.0 100 48.0
Atru.chr3.2963 Acer truncatum HOM05D006694 ORTHO05D008240 5.6e-14 84.0 100 48.0
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 7.3e-14 83.6 58 67.2
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 9.6e-14 83.2 58 70.7
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 2.1e-13 82.0 134 37.3
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 2.4e-12 78.6 94 40.4
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 2.4e-12 78.6 132 31.8
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 2.4e-12 78.6 121 34.7
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 2.6e-11 75.1 125 36.8
Carub.0007s1279 Capsella rubella HOM05D006694 ORTHO05D008240 2.6e-11 75.1 106 38.7
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 2.6e-11 75.1 78 51.3
Manes.09G016633 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-10 72.8 132 32.6
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.3e-10 72.8 86 41.9
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 1.7e-10 72.4 59 55.9
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 1.1e-09 69.7 79 46.8
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 1.1e-09 69.7 95 42.1
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 9.3e-09 66.6 106 33.0
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.2e-08 66.2 134 32.1
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 3.5e-08 64.7 151 29.1
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 3.5e-08 64.7 152 28.3
VMungo1383G3689 Vigna mungo HOM05D000162 ORTHO05D000090 3.5e-08 64.7 147 27.2
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 4.6e-08 64.3 51 51.0
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.8e-07 62.4 134 26.9
Aa31LG5G21690 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.0e-07 61.6 137 32.1
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 3.9e-07 61.2 82 43.9
Nn3g18307 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.9e-07 61.2 115 27.0
Phvul.008G069700 Phaseolus vulgaris HOM05D000162 ORTHO05D000090 3.9e-07 61.2 142 28.2
EL10Ac5g10449 Beta vulgaris HOM05D000162 ORTHO05D000090 6.7e-07 60.5 118 28.8
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 6.7e-07 60.5 158 26.6
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 1.1e-06 59.7 156 27.6
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.3e-06 57.8 99 32.3
GSVIVG01037290001 Vitis vinifera HOM05D006694 ORTHO05D008240 4.3e-06 57.8 46 56.5
ATR0697G204 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.4e-06 57.0 104 30.8
HPP92_025503 Vanilla planifolia HOM05D062792 ORTHO05D008240 7.4e-06 57.0 87 31.0
HPP92_025533 Vanilla planifolia HOM05D062792 ORTHO05D008240 7.4e-06 57.0 87 31.0


User provided reference genes

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