Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-37 157.1 79 100.0
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 2.7e-36 154.8 79 98.7
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.3e-35 151.8 79 96.2
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-35 151.8 79 96.2
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.3e-34 146.7 76 97.4
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-31 139.0 73 95.9
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.7e-27 125.6 82 82.9
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 3.9e-27 124.4 79 81.0
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-25 119.4 70 85.7
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 5.2e-24 114.0 74 78.4
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-22 109.4 80 71.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 4.2e-21 104.4 85 67.1
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 5.4e-21 104.0 80 70.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 7.1e-21 103.6 81 69.1
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 9.3e-21 103.2 81 70.4
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 9.3e-21 103.2 77 71.4
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.6e-20 102.4 81 70.4
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-20 102.4 80 70.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.6e-20 102.4 80 70.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.1e-20 102.1 81 70.4
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.5e-20 101.3 81 70.4
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.5e-20 101.3 81 70.4
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.6e-20 100.9 81 65.4
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.6e-20 100.9 82 68.3
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.0e-19 99.8 80 67.5
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.0e-19 99.8 80 67.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.3e-19 99.4 81 67.9
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.3e-19 99.4 80 66.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.7e-19 99.0 80 68.8
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 3.9e-19 97.8 81 67.9
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.9e-19 97.8 85 62.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 5.1e-19 97.4 77 66.2
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.1e-19 97.4 83 61.4
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 5.1e-19 97.4 83 61.4
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 8.7e-19 96.7 81 67.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 8.7e-19 96.7 76 64.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.1e-18 96.3 75 68.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.1e-18 96.3 83 63.9
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.3e-18 94.7 79 65.8
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.3e-18 94.4 75 69.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.3e-18 94.4 75 69.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.3e-18 94.4 80 62.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.6e-18 94.0 81 65.4
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 5.6e-18 94.0 75 66.7
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 7.3e-18 93.6 82 59.8
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 7.3e-18 93.6 77 67.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 9.6e-18 93.2 77 61.0
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-17 92.8 49 98.0
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.6e-17 92.4 75 65.3
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.6e-17 92.4 75 68.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.6e-17 92.4 85 61.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.1e-17 92.0 75 68.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.1e-17 92.0 80 65.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.1e-17 92.0 77 64.9
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 2.1e-17 92.0 81 63.0
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.6e-17 91.3 80 61.2
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 6.2e-17 90.5 79 65.8
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 8.1e-17 90.1 80 62.5
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.1e-17 90.1 80 62.5
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-16 89.4 81 64.2
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.8e-16 89.0 86 55.8
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.4e-16 88.6 79 65.8
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.4e-16 88.6 85 61.2
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 4.0e-16 87.8 76 63.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 5.3e-16 87.4 84 56.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.2e-15 86.3 80 58.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.0e-15 85.5 78 60.3
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.4e-15 84.7 73 60.3
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.4e-15 84.7 85 58.8
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.5e-15 84.3 73 60.3
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.5e-15 84.3 87 59.8
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 4.5e-15 84.3 79 58.2
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 4.5e-15 84.3 76 64.5
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.8e-15 84.0 82 58.5
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 9.9e-15 83.2 86 58.1
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 9.9e-15 83.2 93 54.8
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 9.9e-15 83.2 78 56.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.7e-14 82.4 71 62.0
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.7e-14 82.4 80 58.8
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.2e-14 82.0 91 54.9
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.2e-14 82.0 89 53.9
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.9e-14 81.6 79 55.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 3.8e-14 81.3 81 58.0
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 4.9e-14 80.9 81 55.6
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.9e-14 80.9 73 63.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.9e-14 80.9 91 54.9
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 6.4e-14 80.5 75 58.7
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 6.4e-14 80.5 77 62.3
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 6.4e-14 80.5 77 62.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 6.4e-14 80.5 79 57.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 8.4e-14 80.1 77 57.1
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.4e-14 80.1 84 52.4
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 8.4e-14 80.1 80 56.2
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.1e-13 79.7 74 59.5
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.4e-13 79.3 73 58.9
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-13 79.3 85 56.5
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.9e-13 79.0 85 56.5
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.4e-13 78.6 79 57.0
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 77 58.4
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.2e-13 78.2 82 53.7
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.2e-13 77.8 76 55.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.2e-13 77.8 76 55.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.4e-13 77.4 85 55.3
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.4e-13 77.4 79 55.7
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 51.3
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.1e-13 77.0 73 57.5
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 9.3e-13 76.6 74 58.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 91 51.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.2e-12 76.3 78 51.3
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.5e-12 74.7 85 54.1
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.5e-12 74.7 78 53.8
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.5e-12 74.7 82 56.1
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.0e-12 73.9 83 54.2
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 7.9e-12 73.6 73 56.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.9e-12 73.6 80 52.5
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.0e-11 73.2 75 56.0
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.0e-11 73.2 76 51.3
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.0e-11 73.2 79 51.9
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.3e-11 72.8 80 52.5
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.8e-11 72.4 83 56.6
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.9e-11 71.2 77 61.0
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.1e-11 70.9 78 52.6
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.7e-11 70.1 76 52.6
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 8.7e-11 70.1 84 47.6
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 8.7e-11 70.1 74 58.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 74 51.4
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 77 53.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.5e-10 69.3 92 50.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 72 56.9
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 82 48.8
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.5e-10 68.6 76 52.6
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.5e-10 68.6 93 47.3
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 3.3e-10 68.2 79 49.4
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 72 55.6
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 4.3e-10 67.8 76 51.3
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.3e-10 67.8 74 52.7
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 82 51.2
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 4.3e-10 67.8 86 48.8
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.3e-10 67.8 83 49.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 7.4e-10 67.0 83 51.8
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-09 66.2 82 50.0
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.3e-09 66.2 82 48.8
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-09 65.9 86 48.8
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-09 65.9 82 48.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-09 65.9 68 52.9
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-09 65.9 71 53.5
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.6e-09 65.9 68 52.9
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.7e-09 64.7 79 51.9
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.7e-09 64.7 89 48.3
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 6.2e-09 63.9 78 51.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 8.1e-09 63.5 69 52.2
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.1e-09 63.5 76 48.7
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 8.1e-09 63.5 95 45.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.4e-08 62.0 75 48.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 4.0e-08 61.2 80 46.2
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 6.9e-08 60.5 77 50.6
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.2e-07 59.7 78 47.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.2e-07 59.7 82 46.3
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.5e-07 57.8 84 41.7
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 9.9e-07 56.6 58 56.9
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.9e-06 55.1 79 44.3
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.9e-06 55.1 89 41.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 6.4e-06 53.9 78 44.9
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 8.4e-06 53.5 77 44.2


User provided reference genes

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