Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 9.8e-273 943.0 511 100.0
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.7e-270 934.9 511 98.8
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 4.4e-265 917.5 518 96.3
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.4e-265 917.5 518 96.3
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.5e-265 916.8 518 96.1
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.4e-256 886.7 520 92.7
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 8.1e-235 817.0 542 84.5
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 3.0e-173 612.5 563 66.6
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.2e-161 573.9 559 63.5
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 5.6e-159 565.1 555 62.3
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 4.6e-129 465.7 534 55.6
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.0e-128 464.5 558 52.9
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 7.3e-127 458.4 541 53.8
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 6.2e-126 455.3 545 54.7
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.4e-125 453.4 550 52.5
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 5.3e-125 452.2 544 52.9
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 6.4e-123 445.3 561 51.9
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.9e-122 443.7 541 51.2
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 3.2e-122 443.0 562 51.6
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.6e-121 440.7 541 51.2
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.7e-121 439.9 568 50.4
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 6.0e-121 438.7 537 52.5
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 7.9e-121 438.3 546 51.6
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 3.0e-120 436.4 580 50.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 1.9e-119 433.7 584 50.5
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 6.2e-118 428.7 567 51.0
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 6.2e-118 428.7 514 54.3
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 6.2e-118 428.7 578 49.3
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 8.1e-118 428.3 530 52.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 6.9e-117 425.2 563 49.0
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 6.9e-117 425.2 564 49.3
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 9.0e-117 424.9 529 52.4
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.2e-116 424.5 579 50.6
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 4.5e-116 422.5 549 51.9
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 9.9e-116 421.4 564 50.2
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.2e-115 420.2 631 47.4
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 2.9e-115 419.9 535 51.4
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 2.9e-115 419.9 535 51.4
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.9e-115 419.9 530 51.7
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 8.4e-115 418.3 407 62.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.3e-114 414.8 564 48.8
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 9.3e-114 414.8 610 48.4
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 9.3e-114 414.8 557 51.0
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 6.0e-113 412.1 534 49.4
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 6.0e-113 412.1 539 49.4
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.3e-112 411.0 553 50.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.3e-112 411.0 533 49.5
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.3e-111 406.4 558 49.5
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 4.3e-111 406.0 559 48.8
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.6e-111 405.6 558 49.5
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.6e-111 405.6 595 47.6
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 7.4e-111 405.2 538 48.5
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 2.8e-110 403.3 545 49.7
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 6.2e-110 402.1 533 49.9
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 1.1e-109 401.4 396 56.8
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.1e-109 401.4 592 47.8
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 2.4e-109 400.2 516 50.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 4.0e-109 399.4 553 49.0
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.0e-108 397.1 354 64.7
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.0e-108 397.1 552 48.7
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.0e-108 397.1 392 58.2
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 5.8e-108 395.6 585 47.2
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.2e-107 393.7 389 59.9
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.4e-106 391.0 549 48.5
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 3.2e-106 389.8 533 50.7
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 3.2e-106 389.8 566 48.2
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 4.2e-106 389.4 538 48.0
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 5.5e-106 389.0 534 49.8
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.1e-105 387.1 579 47.5
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 3.5e-105 386.3 535 50.1
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 2.3e-104 383.6 552 46.7
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 5.1e-104 382.5 387 58.4
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.1e-103 381.3 577 47.0
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 7.4e-103 378.6 405 56.5
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 7.4e-103 378.6 548 48.7
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 9.7e-103 378.3 391 56.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 6.3e-102 375.6 534 47.8
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 8.2e-102 375.2 564 47.5
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.1e-101 374.8 403 56.1
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 1.1e-101 374.8 461 51.6
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.4e-101 374.4 518 47.9
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 4.1e-101 372.9 557 46.7
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.0e-99 368.2 554 46.8
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.7e-99 367.5 527 46.7
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.2e-99 367.1 533 47.5
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 6.5e-99 365.5 400 55.8
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 8.5e-99 365.2 536 47.0
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.1e-98 364.8 512 47.3
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.9e-98 364.0 399 56.1
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.5e-98 363.6 398 55.8
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 4.2e-98 362.8 399 55.9
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 4.2e-98 362.8 399 55.9
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 5.5e-98 362.5 557 44.5
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 3.6e-97 359.8 538 47.6
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 6.1e-97 359.0 538 47.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.8e-96 357.5 541 46.4
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 5.7e-95 352.4 539 47.9
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 5.3e-93 345.9 431 49.7
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.6e-92 343.6 529 46.7
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 5.9e-92 342.4 516 47.5
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 5.9e-92 342.4 539 45.6
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 2.2e-86 323.9 419 49.4
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 2.0e-84 317.4 480 45.4
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 4.5e-84 316.2 517 43.1
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.5e-82 309.3 386 51.6
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.3e-80 303.9 533 44.1
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 5.2e-80 302.8 428 47.4
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.3e-78 298.1 532 40.4
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.7e-78 297.7 421 47.3
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.2e-78 297.4 386 47.9
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 2.4e-77 293.9 387 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 3.3e-50 203.8 375 40.8
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 2.8e-49 200.7 340 41.8
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.7e-49 199.9 141 68.8
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.0e-45 186.0 132 68.9
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 9.2e-45 185.7 453 35.5
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 8.6e-43 179.1 289 38.1
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.8e-40 171.4 268 43.7
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.7e-38 164.9 266 41.4
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 2.4e-37 161.0 193 47.2
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 6.6e-35 152.9 339 36.6
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-33 148.7 108 68.5
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 9.9e-31 139.0 213 42.7
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.0e-27 129.0 117 60.7
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 1.9e-26 124.8 204 40.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 2.5e-26 124.4 197 40.6
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 2.8e-25 120.9 103 55.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 2.8e-25 120.9 103 55.3
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 1.8e-24 118.2 204 40.2
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 4.0e-24 117.1 326 31.9
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.3e-18 97.4 123 50.4
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 5.2e-16 90.1 175 43.4
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.8e-15 86.7 62 67.7
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.3e-11 75.5 191 40.3
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 8.1e-09 66.2 206 27.2
Dinv35762 Davidia involucrata HOM05D000142 ORTHO05D001253 2.6e-07 61.2 221 24.4
Carub.0001s2227 Capsella rubella HOM05D000428 ORTHO05D000582 1.7e-06 58.5 217 24.0
Actinidia13083 Actinidia chinensis HOM05D000142 ORTHO05D001253 2.9e-06 57.8 209 28.2
CDE04G2558 Ceratophyllum demersum HOM05D000142 ORTHO05D001253 2.9e-06 57.8 208 26.4
Hma1.2p1_0614F.1_g189420 Hydrangea macrophylla HOM05D000142 ORTHO05D001253 3.8e-06 57.4 212 25.0
Actinidia31343 Actinidia chinensis HOM05D000142 ORTHO05D001253 4.9e-06 57.0 209 27.8


User provided reference genes

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