Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.0e-66 255.0 125 100.0
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.2e-64 248.8 125 96.8
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.2e-64 248.8 125 96.8
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.8e-64 247.7 125 97.6
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 3.5e-54 214.9 129 83.7
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 9.2e-23 110.5 140 53.6
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 2.2e-16 89.4 127 45.7
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 7.0e-15 84.3 123 48.0
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.2e-14 83.6 123 47.2
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.6e-14 83.2 128 48.4
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.7e-14 82.4 123 40.7
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 3.5e-14 82.0 118 41.5
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.6e-14 81.6 124 48.4
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.0e-14 81.3 115 43.5
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 6.0e-14 81.3 115 46.1
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.0e-13 80.5 62 61.3
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.0e-13 80.5 89 49.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.0e-13 80.5 113 47.8
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.3e-13 80.1 123 44.7
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.3e-13 79.3 126 46.8
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 3.0e-13 79.0 130 47.7
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 5.1e-13 78.2 63 58.7
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 6.6e-13 77.8 118 44.1
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 8.6e-13 77.4 116 48.3
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.1e-12 77.0 115 41.7
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.1e-12 77.0 137 41.6
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.5e-12 76.6 85 52.9
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.5e-12 76.6 124 46.0
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.9e-12 76.3 112 45.5
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 2.5e-12 75.9 128 42.2
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.5e-12 75.9 128 42.2
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.5e-12 75.9 115 44.3
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 5.6e-12 74.7 115 39.1
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 5.6e-12 74.7 123 41.5
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.3e-12 74.3 113 45.1
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 7.3e-12 74.3 111 46.8
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 9.5e-12 73.9 123 39.8
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.2e-11 73.6 111 43.2
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 1.6e-11 73.2 114 43.0
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 1.6e-11 73.2 114 43.0
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.6e-11 73.2 106 45.3
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.1e-11 72.8 112 42.0
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 3.6e-11 72.0 116 42.2
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.6e-11 72.0 108 46.3
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.6e-11 72.0 118 44.1
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 3.6e-11 72.0 114 40.4
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 8.1e-11 70.9 68 51.5
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-10 70.5 111 40.5
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.1e-10 70.5 111 39.6
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.4e-10 70.1 87 46.0
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.4e-10 70.1 72 50.0
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.4e-10 70.1 118 43.2
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.8e-10 69.7 111 43.2
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.8e-10 69.7 112 43.8
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.1e-10 68.9 62 56.5
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 3.1e-10 68.9 66 54.5
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 3.1e-10 68.9 109 39.4
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 3.1e-10 68.9 111 44.1
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 3.1e-10 68.9 63 57.1
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 4.0e-10 68.6 60 53.3
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 4.0e-10 68.6 109 45.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 4.0e-10 68.6 115 42.6
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 4.0e-10 68.6 68 51.5
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 5.2e-10 68.2 78 51.3
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 6.8e-10 67.8 123 39.8
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 6.8e-10 67.8 64 54.7
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 8.9e-10 67.4 113 38.1
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.9e-10 67.4 111 39.6
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.2e-09 67.0 124 44.4
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.0e-09 66.2 113 43.4
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.0e-09 66.2 113 43.4
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.0e-09 66.2 89 48.3
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.6e-09 65.9 103 39.8
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.6e-09 65.9 116 42.2
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.6e-09 65.9 107 40.2
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 3.4e-09 65.5 127 37.8
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 4.4e-09 65.1 60 56.7
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.4e-09 65.1 118 39.8
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 4.4e-09 65.1 114 43.0
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 4.4e-09 65.1 110 45.5
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 5.8e-09 64.7 113 41.6
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.8e-09 64.7 64 50.0
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 7.5e-09 64.3 114 43.0
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 7.5e-09 64.3 117 36.8
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.3e-08 63.5 111 37.8
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.3e-08 63.5 75 46.7
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.7e-08 63.2 60 55.0
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.7e-08 63.2 126 40.5
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.7e-08 63.2 86 46.5
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.2e-08 62.8 108 38.9
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.2e-08 62.8 82 45.1
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 2.2e-08 62.8 116 41.4
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.9e-08 62.4 123 38.2
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.9e-08 62.4 122 39.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 3.7e-08 62.0 60 51.7
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 3.7e-08 62.0 60 51.7
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 3.7e-08 62.0 65 50.8
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 3.7e-08 62.0 61 50.8
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.9e-08 61.6 110 39.1
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 6.4e-08 61.2 111 40.5
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 8.3e-08 60.8 112 44.6
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 1.1e-07 60.5 60 50.0
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.1e-07 60.5 62 54.8
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.9e-07 59.7 68 48.5
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.9e-07 59.7 94 45.7
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.4e-07 59.3 63 52.4
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.2e-07 58.9 63 54.0
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 3.2e-07 58.9 62 50.0
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 4.1e-07 58.5 120 37.5
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.1e-07 58.5 131 34.4
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.1e-07 57.8 62 53.2
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 7.1e-07 57.8 115 40.9
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-06 57.0 111 38.7
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.6e-06 56.6 63 52.4
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 2.1e-06 56.2 127 36.2
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.1e-06 56.2 113 36.3
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 2.1e-06 56.2 115 38.3
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.7e-06 55.8 62 48.4
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 2.7e-06 55.8 114 39.5
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 6.0e-06 54.7 61 49.2
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 6.0e-06 54.7 109 38.5


User provided reference genes

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