Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2878 Fragaria x ananassa HOM05D003646 ORTHO05D201260 3.5e-126 454.9 221 100.0
RcHm_v2.0_Chr4g0430531 Rosa chinensis HOM05D003646 ORTHO05D004503 1.6e-41 173.7 161 57.1
FAN07G1027 Fragaria x ananassa HOM05D003646 ORTHO05D004503 1.4e-37 160.6 177 50.8
Prupe.1G227000 Prunus persica HOM05D003646 ORTHO05D004503 2.9e-35 152.9 163 51.5
FAN17G0152 Fragaria x ananassa HOM05D003646 ORTHO05D004503 1.1e-34 151.0 164 50.6
FvH4_4g23890 Fragaria vesca HOM05D003646 ORTHO05D004503 5.4e-34 148.7 162 50.6
FAN12G1917 Fragaria x ananassa HOM05D003646 ORTHO05D004503 5.4e-34 148.7 162 50.6
MD16G1118100 Malus domestica HOM05D003646 ORTHO05D004503 3.9e-32 142.5 163 49.1
QL03p053648 Quercus lobata HOM05D003646 ORTHO05D004503 4.0e-29 132.5 165 46.1
CiPaw.03G055000 Carya illinoinensis HOM05D003646 ORTHO05D004503 2.0e-28 130.2 163 44.2
Ca_04435_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 4.4e-28 129.0 163 42.9
Sopen02g038740 Solanum pennellii HOM05D003646 ORTHO05D004503 2.2e-27 126.7 163 42.3
TPR.G16204 Trifolium pratense HOM05D003646 ORTHO05D004503 2.9e-27 126.3 163 41.7
COL.COLO4_17205 Corchorus olitorius HOM05D003646 ORTHO05D004503 3.7e-27 125.9 165 44.2
Duzib147G0655 Durio zibethinus HOM05D003646 ORTHO05D004503 3.7e-27 125.9 163 42.9
Medtr6g023975 Medicago truncatula HOM05D003646 ORTHO05D004503 3.7e-27 125.9 163 41.7
PGSC0003DMG400020212 Solanum tuberosum HOM05D003646 ORTHO05D004503 3.7e-27 125.9 163 42.3
Aqoxy5G03396 Aquilegia oxysepala HOM05D003646 ORTHO05D004503 4.9e-27 125.6 165 44.2
Psat1g086840 Pisum sativum HOM05D003646 ORTHO05D004503 4.9e-27 125.6 161 41.6
Solyc02g094120.3 Solanum lycopersicum HOM05D003646 ORTHO05D004503 4.9e-27 125.6 163 41.7
Lalb_Chr21g0317451 Lupinus albus HOM05D003646 ORTHO05D004503 1.1e-26 124.4 163 41.7
Manes.15G160200 Manihot esculenta HOM05D003646 ORTHO05D004503 1.1e-26 124.4 163 43.6
Ca_26781_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 1.9e-26 123.6 163 41.1
Lj7A608G42 Lonicera japonica HOM05D003646 ORTHO05D004503 1.9e-26 123.6 163 41.1
Thecc.04G035300 Theobroma cacao HOM05D003646 ORTHO05D004503 1.9e-26 123.6 166 43.4
CSS0009384 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 2.4e-26 123.2 164 43.3
Hma1.2p1_0279F.1_g112713 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 2.4e-26 123.2 200 38.5
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 3.2e-26 122.9 149 45.6
Haze_14869 Corylus avellana HOM05D003646 ORTHO05D004503 3.2e-26 122.9 161 42.9
Glyma.19G071800 Glycine max HOM05D003646 ORTHO05D004503 3.2e-26 122.9 163 41.1
VMungo0464G0965 Vigna mungo HOM05D003646 ORTHO05D004503 3.2e-26 122.9 163 40.5
Atru.chr6.2563 Acer truncatum HOM05D003646 ORTHO05D004503 4.1e-26 122.5 161 42.9
Nitab4.5_0011569g0050 Nicotiana tabacum HOM05D003646 ORTHO05D004503 4.1e-26 122.5 164 40.9
CAN.G473.96 Capsicum annuum HOM05D003646 ORTHO05D004503 7.0e-26 121.7 163 41.1
Manes.17G103400 Manihot esculenta HOM05D003646 ORTHO05D004503 7.0e-26 121.7 163 42.9
CANSAT64G2942 Cannabis sativa HOM05D003646 ORTHO05D004503 9.2e-26 121.3 227 37.0
Cpa.g.sc171.20 Carica papaya HOM05D003646 ORTHO05D004503 9.2e-26 121.3 166 43.4
Lj2g0025838 Lotus japonicus HOM05D003646 ORTHO05D004503 9.2e-26 121.3 161 41.0
Medtr7g033410 Medicago truncatula HOM05D003646 ORTHO05D004503 9.2e-26 121.3 203 36.5
PGR083G0278 Punica granatum HOM05D003646 ORTHO05D004503 9.2e-26 121.3 164 43.3
Rhsim12G0099200 Rhododendron simsii HOM05D003646 ORTHO05D004503 9.2e-26 121.3 151 46.4
Gorai.006G041700 Gossypium raimondii HOM05D003646 ORTHO05D004503 1.2e-25 120.9 165 44.2
TAR374G0357 Trochodendron aralioides HOM05D003646 ORTHO05D004503 1.2e-25 120.9 163 42.3
Ah.03g147470 Amaranthus hybridus HOM05D003646 ORTHO05D004503 1.6e-25 120.6 163 41.7
EL10Ac6g15361 Beta vulgaris HOM05D003646 ORTHO05D004503 1.6e-25 120.6 163 40.5
DCAR_021791 Daucus carota HOM05D003646 ORTHO05D004503 1.6e-25 120.6 161 41.0
Nitab4.5_0002050g0110 Nicotiana tabacum HOM05D003646 ORTHO05D004503 1.6e-25 120.6 175 38.3
Actinidia04439 Actinidia chinensis HOM05D003646 ORTHO05D004503 2.0e-25 120.2 166 41.6
Actinidia30882 Actinidia chinensis HOM05D003646 ORTHO05D004503 2.0e-25 120.2 166 41.0
PSO017G2867 Papaver somniferum HOM05D003646 ORTHO05D004503 2.0e-25 120.2 161 42.2
Peaxi162Scf00420g00552 Petunia axillaris HOM05D003646 ORTHO05D004503 2.0e-25 120.2 161 41.0
Psat3g164760 Pisum sativum HOM05D003646 ORTHO05D004503 2.0e-25 120.2 163 39.9
Prupe.3G305700 Prunus persica HOM05D003646 ORTHO05D004503 2.0e-25 120.2 161 41.6
QL02p071550 Quercus lobata HOM05D003646 ORTHO05D004503 2.0e-25 120.2 161 42.2
TWI56G0364 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 2.0e-25 120.2 164 42.1
TAR622G1416 Trochodendron aralioides HOM05D003646 ORTHO05D004503 2.0e-25 120.2 161 42.9
GSVIVG01033099001 Vitis vinifera HOM05D003646 ORTHO05D004503 2.0e-25 120.2 163 41.1
ATR0561G114 Amborella trichopoda HOM05D003646 ORTHO05D004503 2.7e-25 119.8 161 40.4
Lsat_1_v5_gn_2_92941 Lactuca sativa HOM05D003646 ORTHO05D004503 2.7e-25 119.8 162 42.6
Cc07_g00790 Coffea canephora HOM05D003646 ORTHO05D004503 3.5e-25 119.4 163 42.9
Migut.K01461 Erythranthe guttata HOM05D003646 ORTHO05D004503 4.6e-25 119.0 165 44.2
Gohir.A09G035500 Gossypium hirsutum HOM05D003646 ORTHO05D004503 4.6e-25 119.0 165 43.0
MD09G1011300 Malus domestica HOM05D003646 ORTHO05D004503 4.6e-25 119.0 161 41.6
SalBow4G1548 Salvia bowleyana HOM05D003646 ORTHO05D004503 4.6e-25 119.0 161 42.2
HanXRQChr07g0198211 Helianthus annuus HOM05D003646 ORTHO05D004503 6.0e-25 118.6 161 42.9
Lj1g0013072 Lotus japonicus HOM05D003646 ORTHO05D004503 6.0e-25 118.6 163 39.9
Phvul.004G054200 Phaseolus vulgaris HOM05D003646 ORTHO05D004503 6.0e-25 118.6 163 39.9
CSS0046571 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 7.8e-25 118.2 166 41.0
PSO478G1257 Papaver somniferum HOM05D003646 ORTHO05D004503 7.8e-25 118.2 161 41.6
SalBow7G3637 Salvia bowleyana HOM05D003646 ORTHO05D004503 7.8e-25 118.2 164 44.5
SGA_v2.0_scaffold154G37169 Striga asiatica HOM05D003646 ORTHO05D004503 7.8e-25 118.2 169 39.6
Ciclev10015526m.g Citrus clementina HOM05D003646 ORTHO05D004503 1.0e-24 117.9 163 40.5
Gohir.D07G235000 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.0e-24 117.9 163 40.5
Gohir.D09G036700 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.0e-24 117.9 165 43.6
Nn3g16489 Nelumbo nucifera HOM05D003646 ORTHO05D004503 1.0e-24 117.9 163 41.1
Cfa007232 Carpinus fangiana HOM05D003646 ORTHO05D004503 1.3e-24 117.5 161 41.6
CDE05G3065 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 1.3e-24 117.5 161 39.8
HanXRQChr14g0450741 Helianthus annuus HOM05D003646 ORTHO05D004503 1.3e-24 117.5 164 42.7
Rhsim08G0043500 Rhododendron simsii HOM05D003646 ORTHO05D004503 1.7e-24 117.1 161 41.0
arahy.Tifrunner.gnm1.ann1.415AAL Arachis hypogaea HOM05D003646 ORTHO05D004503 2.3e-24 116.7 161 42.2
arahy.Tifrunner.gnm1.ann1.ZHHZ35 Arachis hypogaea HOM05D003646 ORTHO05D004503 2.3e-24 116.7 161 42.2
Os08g0530400 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 2.3e-24 116.7 165 42.4
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.0e-24 116.3 163 41.7
SGA_v2.0_scaffold253G45201 Striga asiatica HOM05D003646 ORTHO05D004503 3.0e-24 116.3 161 41.0
MSTRG.24091 Avicennia marina HOM05D003646 ORTHO05D004503 5.0e-24 115.5 161 41.0
ECA238G3019 Erigeron canadensis HOM05D003646 ORTHO05D004503 5.0e-24 115.5 164 43.3
FAN05G0052 Fragaria x ananassa HOM05D003646 ORTHO05D004503 5.0e-24 115.5 148 44.6
TWI36G1744 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 5.0e-24 115.5 162 42.0
Eucgr.J02338 Eucalyptus grandis HOM05D003646 ORTHO05D004503 6.6e-24 115.2 161 39.8
Lalb_Chr14g0363371 Lupinus albus HOM05D003646 ORTHO05D004503 6.6e-24 115.2 163 38.7
Sc03g0006580 Simmondsia chinensis HOM05D003646 ORTHO05D004503 6.6e-24 115.2 163 40.5
Zm00001eb036560 Zea mays HOM05D003646 ORTHO05D004503 6.6e-24 115.2 163 41.1
Duzib187G0941 Durio zibethinus HOM05D003646 ORTHO05D004503 1.1e-23 114.4 163 42.3
Potri.001G330900 Populus trichocarpa HOM05D003646 ORTHO05D004503 1.1e-23 114.4 163 41.1
Gorai.001G270800 Gossypium raimondii HOM05D003646 ORTHO05D004503 1.5e-23 114.0 174 39.1
MELO3C008194.2 Cucumis melo HOM05D003646 ORTHO05D004503 1.9e-23 113.6 166 42.2
Os12g0442800 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 1.9e-23 113.6 161 41.0
RcHm_v2.0_Chr2g0175501 Rosa chinensis HOM05D003646 ORTHO05D004503 1.9e-23 113.6 161 39.8
CDE02G1734 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 2.5e-23 113.2 160 39.4
Peaxi162Scf01327g00121 Petunia axillaris HOM05D003646 ORTHO05D004503 2.5e-23 113.2 201 35.3
Gohir.A07G227900 Gossypium hirsutum HOM05D003646 ORTHO05D004503 3.3e-23 112.8 177 39.0
FvH4_6g53430 Fragaria vesca HOM05D003646 ORTHO05D004503 5.6e-23 112.1 161 39.1
FAN14G4384 Fragaria x ananassa HOM05D003646 ORTHO05D004503 5.6e-23 112.1 161 39.1
HPP92_007003 Vanilla planifolia HOM05D003646 ORTHO05D004503 5.6e-23 112.1 161 39.8
Sabra16G0211900 Salix brachista HOM05D003646 ORTHO05D004503 7.3e-23 111.7 163 39.9
Aa31LG5G11030 Aethionema arabicum HOM05D003646 ORTHO05D004503 9.5e-23 111.3 161 40.4
FAN02G3516 Fragaria x ananassa HOM05D003646 ORTHO05D004503 9.5e-23 111.3 161 39.1
BcaC05g25479 Brassica carinata HOM05D003646 ORTHO05D004503 1.2e-22 110.9 163 41.1
Sed0021199 Sechium edule HOM05D003646 ORTHO05D004503 1.2e-22 110.9 161 40.4
THA.LOC104821116 Tarenaya hassleriana HOM05D003646 ORTHO05D004503 1.2e-22 110.9 163 38.7
A06p11420 Brassica napus HOM05D003646 ORTHO05D004503 1.6e-22 110.5 163 40.5
unitig_578.g15929 Utricularia gibba HOM05D003646 ORTHO05D004503 1.6e-22 110.5 164 41.5
CARHR075040 Cardamine hirsuta HOM05D003646 ORTHO05D004503 2.1e-22 110.2 164 39.6
MBI07_g34622_MAGBIO Magnolia biondii HOM05D003646 ORTHO05D004503 2.1e-22 110.2 189 36.5
Hma1.2p1_2636F.1_g325820 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 3.6e-22 109.4 155 41.3
BraA06t24320Z Brassica rapa HOM05D003646 ORTHO05D004503 4.7e-22 109.0 163 40.5
Thhalv10022262m.g Eutrema salsugineum HOM05D003646 ORTHO05D004503 4.7e-22 109.0 163 39.3
Sp3g00180 Schrenkiella parvula HOM05D003646 ORTHO05D004503 4.7e-22 109.0 163 40.5
BraA02t08098Z Brassica rapa HOM05D003646 ORTHO05D004503 6.2e-22 108.6 164 40.9
AUR62017819 Chenopodium quinoa HOM05D003646 ORTHO05D004503 8.1e-22 108.2 161 39.1
BcaC05g25487 Brassica carinata HOM05D003646 ORTHO05D004503 1.1e-21 107.8 161 38.5
C02p48410 Brassica napus HOM05D003646 ORTHO05D004503 1.1e-21 107.8 164 41.5
C05p13540 Brassica napus HOM05D003646 ORTHO05D004503 1.1e-21 107.8 161 38.5
BolC2t10871H Brassica oleracea HOM05D003646 ORTHO05D004503 1.1e-21 107.8 164 41.5
Carub.0003s0017 Capsella rubella HOM05D003646 ORTHO05D004503 1.1e-21 107.8 164 39.0
A02p30850 Brassica napus HOM05D003646 ORTHO05D004503 1.4e-21 107.5 164 40.9
BcaC03g16939 Brassica carinata HOM05D003646 ORTHO05D004503 1.8e-21 107.1 164 40.9
AL3G10220 Arabidopsis lyrata HOM05D003646 ORTHO05D004503 3.1e-21 106.3 161 38.5
AT3G01910 Arabidopsis thaliana HOM05D003646 ORTHO05D004503 6.8e-21 105.1 161 37.9
FAN17G0078 Fragaria x ananassa HOM05D003646 ORTHO05D199172 8.9e-21 104.8 100 59.0
SHI03945 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-20 104.4 184 36.4
SMO145G0143 Selaginella moellendorffii HOM05D003646 ORTHO05D004503 9.8e-20 101.3 165 36.4
AUR62003508 Chenopodium quinoa HOM05D003646 ORTHO05D004503 8.3e-19 98.2 132 42.4
AagrBONN_evm.TU.Sc2ySwM_228.2970 Anthoceros agrestis HOM05D003646 ORTHO05D004503 1.1e-18 97.8 163 36.8
CSS0031819 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 3.2e-18 96.3 133 42.9
Mapoly0004s0050 Marchantia polymorpha HOM05D003646 ORTHO05D004503 3.9e-16 89.4 169 33.1
ClCG03G002950 Citrullus lanatus HOM05D003646 ORTHO05D004503 2.5e-15 86.7 244 29.5
FAN17G0241 Fragaria x ananassa HOM05D003646 ORTHO05D004503 5.6e-15 85.5 255 32.9
Migut.F00068 Erythranthe guttata HOM05D003646 ORTHO05D004503 2.8e-14 83.2 73 54.8
vmacro18339 Vaccinium macrocarpon HOM05D003646 ORTHO05D004503 4.7e-14 82.4 92 43.5
Peaxi162Scf00692g00518 Petunia axillaris HOM05D003646 ORTHO05D004503 8.1e-14 81.6 92 43.5
Pp3c4_10110 Physcomitrium patens HOM05D003646 ORTHO05D004503 8.1e-14 81.6 168 33.9
BolC5t30091H Brassica oleracea HOM05D003646 ORTHO05D004503 1.1e-13 81.3 116 40.5
Hund30535 Selenicereus undatus HOM05D003646 ORTHO05D004503 5.2e-13 79.0 92 42.4
Hund30536 Selenicereus undatus HOM05D003646 ORTHO05D004503 5.2e-13 79.0 92 42.4
Oeu035221.1 Olea europaea HOM05D003646 ORTHO05D004503 8.9e-13 78.2 114 44.7
SEGI_30278 Sequoiadendron giganteum HOM05D003646 ORTHO05D004503 1.2e-12 77.8 73 49.3
Zm00001eb129230 Zea mays HOM05D003646 ORTHO05D004503 2.0e-12 77.0 74 51.4
Pp3c15_16350 Physcomitrium patens HOM05D003646 ORTHO05D004503 4.4e-12 75.9 128 35.9
ClCG11G007080 Citrullus lanatus HOM05D003646 ORTHO05D004503 3.8e-11 72.8 131 37.4
TPR.G38353 Trifolium pratense HOM05D003646 ORTHO05D004503 1.9e-10 70.5 181 29.3
CBR_g21855 Chara braunii HOM05D003646 ORTHO05D004503 2.4e-10 70.1 172 30.2
Manes.18G142504 Manihot esculenta HOM05D003646 ORTHO05D004503 7.1e-10 68.6 41 68.3
Oeu013941.2 Olea europaea HOM05D003646 ORTHO05D004503 2.1e-09 67.0 49 67.3
CSS0028620 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 6.0e-09 65.5 49 63.3
Pp3c1_10390 Physcomitrium patens HOM05D003646 ORTHO05D004503 6.0e-09 65.5 190 28.4
MELO3C004917.2 Cucumis melo HOM05D003646 ORTHO05D004503 1.0e-08 64.7 37 70.3
Dinv33343 Davidia involucrata HOM05D003646 ORTHO05D004503 8.6e-08 61.6 35 74.3
Glyma.05G078300 Glycine max HOM05D003646 ORTHO05D004503 8.6e-08 61.6 37 67.6
CsaV3_1G013880 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.1e-07 61.2 35 71.4
Cre04.g217929 Chlamydomonas reinhardtii HOM05D003646 ORTHO05D004503 1.5e-07 60.8 117 35.9
SEGI_06264 Sequoiadendron giganteum HOM05D003646 ORTHO05D004503 1.9e-07 60.5 76 40.8
RcHm_v2.0_Chr3g0459691 Rosa chinensis HOM05D003646 ORTHO05D004503 2.5e-07 60.1 38 63.2
RcHm_v2.0_Chr4g0438841 Rosa chinensis HOM05D000100 ORTHO05D018398 5.6e-07 58.9 61 57.4
FvH4_6g53351 Fragaria vesca HOM05D003646 ORTHO05D004503 7.3e-07 58.5 35 68.6
arahy.Tifrunner.gnm1.ann1.QX8KZL Arachis hypogaea HOM05D000877 ORTHO05D012137 4.7e-06 55.8 44 56.8
Mapoly0023s0052 Marchantia polymorpha HOM05D000951 ORTHO05D003644 8.1e-06 55.1 171 26.3


User provided reference genes

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