Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 7.1e-142 507.3 265 100.0
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 1.9e-70 270.0 200 77.5
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 1.7e-66 256.9 179 74.3
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 2.7e-64 249.6 202 69.3
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 5.1e-63 245.4 202 67.8
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 6.6e-63 245.0 202 67.3
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 8.6e-63 244.6 202 68.3
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 3.3e-62 242.7 202 66.8
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 7.3e-62 241.5 202 66.3
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 1.2e-61 240.7 202 66.8
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 2.1e-61 240.0 202 65.3
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 4.7e-61 238.8 202 65.3
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 4.7e-61 238.8 202 65.8
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 8.1e-61 238.0 202 65.3
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 1.1e-60 237.7 202 67.3
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 2.4e-60 236.5 202 63.9
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 5.2e-60 235.3 202 65.8
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 8.9e-60 234.6 202 65.3
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 2.0e-59 233.4 202 65.8
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 2.6e-59 233.0 202 64.4
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 3.4e-59 232.6 202 63.9
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 3.4e-59 232.6 249 56.2
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 5.8e-59 231.9 203 64.5
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 7.6e-59 231.5 202 65.3
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 7.6e-59 231.5 202 65.3
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 7.6e-59 231.5 202 64.9
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 7.6e-59 231.5 202 64.9
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 9.9e-59 231.1 202 64.9
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 1.3e-58 230.7 202 63.9
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 1.7e-58 230.3 202 63.9
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.2e-58 229.9 202 63.9
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 2.2e-58 229.9 202 65.3
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 2.9e-58 229.6 202 62.9
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 2.9e-58 229.6 202 62.9
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 3.8e-58 229.2 202 63.4
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 4.9e-58 228.8 202 62.4
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 4.9e-58 228.8 202 62.4
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 4.9e-58 228.8 202 62.9
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 4.9e-58 228.8 202 62.9
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 4.9e-58 228.8 202 62.9
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 4.9e-58 228.8 209 64.1
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 6.4e-58 228.4 202 63.4
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 6.4e-58 228.4 202 63.9
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 6.4e-58 228.4 202 63.9
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 6.4e-58 228.4 202 63.9
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 8.4e-58 228.0 202 63.4
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 8.4e-58 228.0 202 62.9
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 1.1e-57 227.6 202 62.4
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 1.1e-57 227.6 202 61.4
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 1.4e-57 227.3 202 62.4
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.9e-57 226.9 202 63.4
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 2.4e-57 226.5 202 62.9
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 2.4e-57 226.5 202 62.4
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 3.2e-57 226.1 202 62.4
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 7.1e-57 224.9 202 62.4
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 9.2e-57 224.6 201 61.2
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 1.2e-56 224.2 202 62.4
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 2.1e-56 223.4 202 62.4
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 2.1e-56 223.4 202 67.8
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 2.7e-56 223.0 202 63.4
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 2.7e-56 223.0 214 59.8
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 3.5e-56 222.6 202 60.4
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 3.5e-56 222.6 202 61.9
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 4.6e-56 222.2 206 60.2
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 4.6e-56 222.2 202 61.9
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 7.8e-56 221.5 202 61.9
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 7.8e-56 221.5 202 60.9
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 1.3e-55 220.7 200 63.5
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 1.3e-55 220.7 200 63.5
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 2.3e-55 219.9 202 61.4
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 3.9e-55 219.2 223 57.0
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 6.6e-55 218.4 202 62.4
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 8.7e-55 218.0 201 58.7
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 8.7e-55 218.0 202 61.9
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 4.3e-54 215.7 201 60.2
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 5.6e-54 215.3 202 60.4
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 1.6e-53 213.8 202 59.9
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 5.3e-52 208.8 202 60.9
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 1.2e-51 207.6 184 65.2
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 2.0e-51 206.8 202 58.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 5.8e-51 205.3 253 49.0
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 1.7e-50 203.8 202 58.4
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 2.2e-50 203.4 202 58.9
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 8.4e-50 201.4 179 64.8
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 1.4e-49 200.7 202 55.4
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 3.2e-49 199.5 201 57.2
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 3.2e-49 199.5 201 56.7
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 7.8e-48 194.9 202 55.9
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 7.8e-48 194.9 202 55.9
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 1.3e-47 194.1 200 54.5
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 2.8e-45 186.4 201 53.7
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 4.0e-44 182.6 202 54.5
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 4.5e-43 179.1 202 54.5
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 7.6e-43 178.3 202 50.5
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 1.1e-36 157.9 155 57.4
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 1.2e-35 154.5 119 68.1
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 1.7e-34 150.6 150 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 2.5e-33 146.7 201 43.3
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 5.5e-33 145.6 197 44.2
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.6e-29 134.0 84 84.5
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 4.0e-28 129.4 200 44.0
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 9.0e-28 128.3 82 84.1
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 2.6e-27 126.7 213 46.9
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 7.6e-27 125.2 200 42.5
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 1.0e-26 124.8 199 40.7
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 1.3e-26 124.4 200 39.0
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 1.4e-25 120.9 198 37.4
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 2.7e-24 116.7 150 48.7
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 1.5e-22 110.9 144 47.9
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 1.5e-22 110.9 144 47.9
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 4.5e-19 99.4 113 54.9
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 3.8e-18 96.3 110 54.5
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 1.1e-17 94.7 115 47.8
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 1.9e-17 94.0 113 47.8
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 5.5e-17 92.4 83 63.9
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 3.0e-15 86.7 58 79.3
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.3e-14 83.2 58 77.6
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.3e-14 83.2 58 77.6
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.3e-14 83.2 58 77.6
vmacro00700 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 7.4e-14 82.0 122 45.9
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 9.7e-14 81.6 44 95.5
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 1.1e-12 78.2 44 88.6
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 1.1e-12 78.2 104 44.2
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 1.5e-11 74.3 87 49.4
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 2.2e-10 70.5 58 63.8
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 5.0e-10 69.3 111 41.4
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 6.5e-10 68.9 42 78.6
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 6.5e-10 68.9 60 58.3
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.9e-09 67.4 58 56.9
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.9e-09 67.4 60 58.3
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 2.5e-09 67.0 48 60.4
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.2e-09 66.6 58 55.2
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 3.2e-09 66.6 58 56.9
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 4.2e-09 66.2 67 55.2
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 5.5e-09 65.9 58 58.6
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 5.5e-09 65.9 58 58.6
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 7.2e-09 65.5 58 55.2
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 9.4e-09 65.1 60 58.3
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 9.4e-09 65.1 58 55.2
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.2e-08 64.7 58 55.2
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 1.6e-08 64.3 58 55.2
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 2.7e-08 63.5 64 51.6
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 2.7e-08 63.5 58 55.2
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 7.9e-08 62.0 44 70.5
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 1.0e-07 61.6 58 53.4
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.0e-07 61.6 44 65.9
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 1.8e-07 60.8 38 81.6
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 2.3e-07 60.5 58 48.3
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 3.9e-07 59.7 44 59.1
BraA10t42699Z Brassica rapa HOM05D006537 ORTHO05D008186 5.1e-07 59.3 92 42.4
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.1e-07 59.3 58 50.0
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 5.1e-07 59.3 58 50.0
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 5.1e-07 59.3 58 53.4
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 8.8e-07 58.5 62 45.2
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 1.1e-06 58.2 58 51.7
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.1e-06 58.2 58 48.3
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.1e-06 58.2 58 48.3
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 1.5e-06 57.8 58 50.0
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 3.3e-06 56.6 141 29.8
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 3.3e-06 56.6 44 56.8
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 3.3e-06 56.6 46 56.5
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 4.4e-06 56.2 58 50.0
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 4.4e-06 56.2 44 54.5
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.7e-06 55.8 44 56.8
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 7.4e-06 55.5 44 59.1
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 7.4e-06 55.5 44 54.5
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 9.7e-06 55.1 58 44.8


User provided reference genes

Program Settings