Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.5e-278 961.4 470 100.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.4e-265 919.1 465 96.8
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.0e-255 886.3 470 92.1
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.8e-255 884.4 470 91.9
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.5e-255 883.6 470 91.7
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.0e-252 874.8 468 90.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.9e-222 775.8 465 79.1
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.5e-211 739.6 467 76.2
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.3e-207 726.5 465 74.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 7.5e-203 710.7 465 73.5
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 9.9e-203 710.3 465 71.4
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.2e-202 709.1 467 72.8
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.2e-202 709.1 463 73.7
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.6e-200 703.0 466 71.0
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 6.0e-200 701.0 465 73.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.5e-198 695.7 466 70.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.6e-197 693.0 463 70.8
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 3.1e-196 688.7 470 69.8
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.8e-196 687.6 467 69.8
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.8e-195 684.5 468 69.7
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.7e-194 682.9 465 70.3
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.2e-194 682.6 469 70.1
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.1e-192 676.0 465 71.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.7e-192 675.6 465 67.7
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.0e-191 672.2 466 67.6
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 8.7e-191 670.6 465 69.7
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 7.3e-190 667.5 467 68.7
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 5.2e-188 661.4 466 68.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 6.9e-188 661.0 467 69.0
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 9.9e-187 657.1 486 65.0
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.3e-186 656.8 467 67.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.9e-186 655.6 469 67.4
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.1e-185 653.7 461 67.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 9.3e-185 650.6 467 66.6
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.2e-184 650.2 437 70.7
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.6e-184 649.8 465 66.0
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.7e-184 649.0 465 66.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.7e-184 649.0 449 67.7
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 6.6e-183 644.4 475 65.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 8.7e-183 644.0 464 67.0
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 8.7e-183 644.0 465 66.2
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 4.3e-182 641.7 471 66.2
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.8e-181 639.0 465 66.5
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 4.8e-181 638.3 464 65.9
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 6.2e-181 637.9 467 64.5
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.1e-180 637.1 471 65.6
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.1e-180 635.6 462 65.8
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 9.0e-180 634.0 463 65.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 3.4e-179 632.1 467 66.2
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.8e-179 631.3 467 66.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.9e-178 629.0 414 72.5
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.9e-178 629.0 466 66.1
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 3.8e-178 628.6 465 64.9
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 3.8e-178 628.6 463 65.0
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.4e-177 625.9 469 63.5
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.2e-177 625.5 459 64.7
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.2e-176 623.6 465 63.0
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.6e-176 623.2 467 64.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.1e-176 622.9 464 64.9
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.8e-175 619.8 459 64.3
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-175 619.4 461 64.9
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.1e-175 618.2 460 63.9
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.4e-172 610.1 444 66.0
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 9.0e-172 607.4 461 64.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-171 605.9 461 64.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.3e-170 603.6 459 64.3
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.2e-170 602.8 460 63.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-170 602.1 461 63.6
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-170 602.1 461 63.6
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 4.9e-170 601.7 463 63.9
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 4.9e-170 601.7 438 65.5
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.4e-169 600.1 460 62.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-169 599.7 461 63.6
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.2e-169 598.6 468 61.8
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 7.1e-169 597.8 460 62.4
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.6e-168 596.7 459 61.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.6e-168 595.1 463 62.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 4.6e-168 595.1 419 68.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.0e-168 594.7 460 62.2
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.0e-168 594.7 461 63.3
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.0e-167 594.0 453 64.0
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.8e-167 593.2 473 61.9
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.9e-167 592.0 467 63.4
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.1e-167 591.7 458 62.4
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-166 590.1 459 61.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-166 589.7 459 61.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.6e-166 588.2 459 62.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-165 586.6 459 61.2
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.8e-165 585.1 468 60.9
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.1e-164 582.4 437 64.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.5e-161 572.8 487 61.8
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 6.0e-160 568.2 466 58.4
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-159 565.5 442 61.3
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-158 563.9 431 61.7
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 9.7e-158 560.8 437 62.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-157 560.1 484 57.6
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-156 557.0 460 60.0
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 5.3e-156 555.1 466 58.2
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.0e-155 553.1 466 59.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 4.5e-155 552.0 468 59.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.2e-154 549.7 438 63.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.0e-154 548.5 459 59.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-153 545.4 460 59.1
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-152 542.0 433 61.2
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-151 540.0 445 60.0
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 5.1e-151 538.5 497 56.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 8.8e-151 537.7 469 56.3
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.2e-149 533.1 436 58.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 6.3e-149 531.6 469 56.9
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.8e-148 530.0 468 58.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-147 525.8 464 57.3
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.9e-146 522.7 461 54.0
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.1e-145 520.8 342 73.7
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.1e-142 510.8 423 58.9
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-138 497.7 388 62.6
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 6.1e-136 488.4 357 63.6
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 8.8e-135 484.6 446 56.3
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.8e-130 469.2 364 62.1
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.0e-127 459.5 508 48.6
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 8.8e-127 458.0 435 54.3
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.2e-121 439.1 501 46.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.2e-101 373.6 472 43.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.0e-87 326.2 458 40.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 8.9e-87 325.1 432 40.7
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.1e-84 316.2 240 67.1
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-77 294.7 262 57.3
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.6e-74 282.3 189 70.4
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-72 278.1 196 70.4
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-72 277.3 196 70.4
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.4e-71 274.6 198 66.2
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-69 267.3 225 58.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-58 230.3 222 55.9
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-55 221.5 221 53.4
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 3.1e-55 220.3 148 64.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-54 218.0 421 35.4
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-48 198.0 315 39.4
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.5e-41 174.1 273 38.8
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.1e-39 167.2 110 67.3
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-36 157.5 178 48.9
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-32 144.8 193 40.4
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-31 139.4 213 40.8
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.0e-30 137.9 109 64.2
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.4e-30 137.1 115 58.3
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-28 132.1 132 52.3
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.9e-28 131.3 82 75.6
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.6e-27 128.3 93 73.1
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-27 127.9 213 39.4
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.3e-24 118.6 90 64.4
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.2e-24 117.9 57 82.5
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 6.3e-24 116.3 105 53.3
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 8.2e-24 115.9 144 44.4
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.1e-23 114.0 144 43.8
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 9.1e-23 112.5 102 53.9
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-22 111.3 217 38.2
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-22 111.3 76 64.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.5e-22 110.2 76 64.5
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.0e-21 109.0 114 50.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.2e-21 107.8 80 60.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 8.0e-19 99.4 103 53.4
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-18 97.8 63 68.3
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 5.7e-17 93.2 56 71.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.2e-14 85.5 54 68.5
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 4.5e-14 83.6 118 40.7
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.2e-12 77.4 176 29.0
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.5e-12 76.6 186 28.5
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-11 74.7 53 62.3
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 8.0e-11 72.8 53 58.5
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.0e-11 72.8 176 27.8
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 1.3e-08 65.5 40 67.5
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.8e-08 64.3 128 32.0
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 2.4e-07 61.2 56 58.9
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 5.4e-07 60.1 68 41.2
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 7.0e-07 59.7 76 43.4
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 1.6e-06 58.5 50 48.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-06 58.5 154 29.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-06 57.4 176 24.4


User provided reference genes

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